Schizosaccharomyces osmophilus (fission yeast): SOMG_04655
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Entry
SOMG_04655 CDS
T09274
Symbol
rfc3
Name
(RefSeq) DNA replication factor C complex subunit Rfc3
KO
K10756
replication factor C subunit 3/5
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03030
DNA replication
som03410
Base excision repair
som03420
Nucleotide excision repair
som03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SOMG_04655 (rfc3)
03410 Base excision repair
SOMG_04655 (rfc3)
03420 Nucleotide excision repair
SOMG_04655 (rfc3)
03430 Mismatch repair
SOMG_04655 (rfc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
som03032
]
SOMG_04655 (rfc3)
03036 Chromosome and associated proteins [BR:
som03036
]
SOMG_04655 (rfc3)
03400 DNA repair and recombination proteins [BR:
som03400
]
SOMG_04655 (rfc3)
DNA replication proteins [BR:
som03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
SOMG_04655 (rfc3)
DNA Replication Termination Factors
ELG1-RFC complex
SOMG_04655 (rfc3)
Chromosome and associated proteins [BR:
som03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
SOMG_04655 (rfc3)
DNA repair and recombination proteins [BR:
som03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
SOMG_04655 (rfc3)
Check point factors
HRAD17(Rad24)-RFC complex
SOMG_04655 (rfc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_assoc_2
AAA_22
DUF815
AAA_11
AAA_14
AAA_30
AAA_24
RuvB_N
AAA_19
AAA_16
AAA_7
RCF1-5-like_lid
zf-C2H2_2
DEAD
Viral_helicase1
DNAX_ATPase_lid
Mg_chelatase
AAA_5
AAA_3
bpMoxR
Motif
Other DBs
NCBI-GeneID:
80878123
NCBI-ProteinID:
XP_056039780
LinkDB
All DBs
Position
3:complement(join(1388341..1388570,1388612..1388983,1389038..1389111,1389166..1389379,1389433..1389497,1389693..1389766))
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AA seq
342 aa
AA seq
DB search
MAMDKGKGRAMELDNPVQDGSTLPWVEKYRPSGLEDVVAHKDIISTLDRFISTNKVPHML
FYGPPGTGKTSTILACARKVYGPQFRNQVMELNASDDRGIDAVREQIKNFASTRQIFSSS
FKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINKIAPAIQSRCTRFRFQPLP
SLEIEKYVDHVIDNEHCNIDSEAKAAVLKLSRGDMRKALNILQACHAAYEHIDESAVYNC
VGQPHPSDIDYFIKSIMNEEFVTAYNTIFSIKQQKGLALQDITTCIFEALDELQVPANTR
IFILDQLAAIEHRMSFGCSEKIQLSAMIASIKCGVDLAAKNK
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggataaaggaaaaggacgagctatggaattagataatcccgtgcaagacggt
tcaactcttccatgggtggaaaaatatcgtccttctggattagaagatgtagttgcacac
aaagatattatttctacactggatcgattcatcagcacaaacaaagttccccatatgtta
ttttatggtccgccaggaacaggaaagacatctactatccttgcctgtgctcgcaaggta
tatggtccccaattccgcaatcaggttatggaattgaatgctagtgacgaccgtggtatt
gatgctgtcagagaacaaataaaaaactttgcaagcacgcgtcaaattttttcatcctct
tttaaaatgattattttggatgaagccgatgctatgactcttgctgcccagaatgcactc
cgaagagtcattgaaaaatataccaaaaacgttcgcttttgtatcatctgcaactatatt
aacaaaattgctcctgctattcaatcacggtgtactcgttttcgtttccaaccgcttcct
tctttagaaattgaaaaatacgttgaccacgttattgataatgagcattgtaacatagat
tcagaagcaaaagctgccgttttgaagttatcaaggggtgacatgcgtaaagctcttaat
attttacaagcctgccatgcggcttacgaacatattgatgagtctgccgtttacaattgt
gttggccaacctcatccgtcagatatagattattttatcaagtcaataatgaatgaagaa
ttcgttactgcttacaatactattttttcgataaagcagcaaaagggcttggctttgcag
gatataactacttgtatttttgaagctttagacgaacttcaagtaccagctaatacacgc
attttcattttagatcaattggccgctattgagcaccgtatgtctttcggttgctcggaa
aaaattcaacttagtgcaatgattgcaagtattaaatgtggtgtcgatctagccgctaaa
aataaatga
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