Schizosaccharomyces osmophilus (fission yeast): SOMG_04814
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Entry
SOMG_04814 CDS
T09274
Symbol
dcr1
Name
(RefSeq) dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Brite
KEGG Orthology (KO) [BR:
som00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
som03036
]
SOMG_04814 (dcr1)
Chromosome and associated proteins [BR:
som03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
SOMG_04814 (dcr1)
microRNA pathway
RISC loading complex
SOMG_04814 (dcr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dcr1-like_dsRNA-bd_dom
Ribonucleas_3_3
Dicer_dimer
Helicase_C
ResIII
DEAD
dsrm
Motif
Other DBs
NCBI-GeneID:
80878280
NCBI-ProteinID:
XP_056039528
LinkDB
All DBs
Position
3:1724971..1729023
Genome browser
AA seq
1350 aa
AA seq
DB search
MKELKSLQVLREYQRDILHTAKKQNTLLVMATGAGKTLLAVKLIKEKQEKQLLEGAQHQK
RLSVFLVNTVPLVIQQADYLKSQLPFRIGAFYGEISLEMCEELFHSIVLNYEIIVITADL
FYLCLARGFLLIFDFDILVFDECHHAIKNHAYARILIDFYHVAKAATTLEKQLPTIFGMT
ASPYTGKARNPLKRIFEWEELFNAKAYVVSNHRLSQHIPMTKEFVVPYKNLLIDASKNPI
INKCETVFSGCKYVMRSCKAAQCEIIELGVWFGEQVWQFLVEELLRKQSRKSFDGKLSIE
DNVCIKSFITEVEKWSQQQLTLFSGFRAPKLDGNDTSNKVLTLLEFLENFYRDNDTYRTM
IFVERKVTAYSLTRFLRKLKKDTGRLRNIRPFPFVGHGDSDVTALSMHFREQRKNIHNFK
QGVYNILIATSIAEEGIDIPTCNLVIRFNTCQSVTQYVQSKGRARAEDSKFMLLVNDIEQ
AQYQKLQDEERILTTALESLESTRELTSHVLGDNITTQNDIVKYEIDETGALLIEFLAVG
LLYQYCNTLPSDSVTFHYPIFTCISAGQSFIYTVHLPIICNMPTIQGSPSANRKKAKRSA
AFLMCVELINRGLINKHLQPLDYRNKLADMEERDEKALRDIEHDEAFERKIPQCWLNDAE
QFFACKLFPVCKGKIFQPLLFVQSQRIPEFNFIRLRSNFDEVIIKSEVLETPYIMDDELK
SDLQYSTKRLLELGLSSLLKVTDSNRSYWIAPLNTKCSNNLILNDLIDWSAVRSLSSKVQ
VVKDITMLKPHLLLMYDQESIFELYSFESLARQDMQGCSIVCKRMPFKLNYSLNKKQSMQ
IKKPSTSLRLNQVYLTGLSKYLKESALLLPSILYHMEALFLASEFASKHGLKCSLLTMLQ
ALSTEDASMDDNYDRLEFLGDSFLKVYASSTVFLKYTHDQEYQLHVHRKQIISNYNLYMH
AKKMEISRFALSEPMVIRKWCPFGFLRENKHGKNYPSFQLLSKKRLADLVESTIGACILD
NGVDSGLEYCTNLGLGLLDVKNWSDWNNFLDIDFYASLISCKVFPYHEHIEDVTGYTFKN
KAILHLAFIHPTMLSSGEVSGSYQQLEFLGDAVLEYLVVQYLFHKYPESSTGELTNFKSF
FVCNHSLAYVAFLLGLHKYLEYDNSEMFGLIYEYQEMIEEAKSNKVPYFWLEVDPPKFIA
DTFESLICAIYLDSKFSFESLRFVLPLLVDVLGDPLDLHKKNLVLAKVHKLLSAQGCSDY
KVAHKEELEIREDENFKLKRESYIYHTVSFIRHDNVVCLGTSRKLSSAKISMKNKLKGLL
DKNSNLLLYSCDCAFKATDCVKTESGSPEG
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaactaaaatcattacaggttctaagggaatatcagcgagatatcttgcacact
gcaaagaagcaaaacaccttgttagtcatggcaactggtgccggtaaaacattgttagct
gtgaagttaattaaagaaaaacaggagaagcagttgctagaaggagcccaacatcaaaag
cgtttatcggtgtttcttgttaatacggttccattggtcatacaacaagctgattattta
aaatcacagcttccatttcgcataggcgcattttatggggagatatcgctagaaatgtgt
gaagagctttttcacagtatcgtgttgaattatgaaataattgttattacagccgatctg
ttctacctgtgcttggcgcgaggcttcctattaatttttgattttgacattcttgttttt
gatgaatgccatcatgctataaaaaaccatgcatacgctcgcatcctgatagacttctac
catgtcgccaaagcagcaacaacacttgaaaagcagctcccaaccatttttggcatgaca
gcttcaccgtacactgggaaggctcgaaatccgctaaagagaattttcgagtgggaggaa
ttattcaatgccaaagcttacgtggtatcaaatcatcgtctttcccagcatatccctatg
acaaaagaattcgttgtcccttacaaaaatctgctaattgatgcatctaaaaatcctatc
ataaataagtgtgaaacagttttttcaggttgcaagtatgtgatgaggtcatgtaaagcc
gcacaatgcgagattatagaattaggcgtttggtttggtgaacaagtctggcagttctta
gttgaagaacttttaagaaaacagtcaagaaaaagttttgacggaaagttatcgatcgag
gataatgtgtgcattaagagcttcataactgaggtagagaagtggtcgcaacaacaattg
acgttattttctgggtttagagctcccaagttagatggaaatgacacgagcaataaagta
ttgacacttttggaattcctcgaaaacttctatagagacaatgatacatatagaacaatg
atttttgttgaacgaaaagtgacggcttattctcttacaaggtttttacggaaactgaaa
aaagacaccggaagactgagaaatattcgtccttttccattcgttggacatggagattca
gatgtaacagcactgtctatgcactttcgtgagcaaaggaaaaacattcataactttaag
caaggtgtctataatatcctcattgctacgtccatagcagaagaaggaatagacatcccg
acgtgtaaccttgtaattcgttttaatacttgtcaatccgttacacagtatgtgcagtcg
aaaggacgggcaagggccgaagattcaaagtttatgcttttagtaaacgatatagaacaa
gctcagtatcaaaagcttcaagatgaggagcgtattttgacaaccgccttagagagtctt
gaatctactcgcgaattaacctctcatgttctcggcgataatatcacaacacagaacgat
attgtcaagtatgagatagatgaaactggggctctattaattgagtttttggccgtagga
cttctataccagtattgtaataccttgccctctgacagtgttactttccattatcctata
ttcacttgtatttcagcaggtcaatcattcatatatacggttcatctaccaattatttgc
aacatgcctactatacaagggtctccatctgctaatagaaagaaagcgaaacggtcagcc
gcctttttgatgtgcgtggagctcattaaccgtggactaattaacaagcatttgcaacct
ctagattaccgaaacaaattagcggatatggaagaaagagatgaaaaagctttaagagat
attgagcatgatgaagcctttgaacgtaaaatcccccaatgttggttaaacgatgccgag
caattctttgcttgtaaactatttcctgtatgtaaaggtaaaatatttcaacctttgctg
ttcgttcagtcgcagcgaatacctgaattcaattttatacgacttcgttctaattttgat
gaagttattatcaagtcagaagtattagaaactccttatatcatggatgatgaactaaag
tctgaccttcaatactctaccaaacggcttttggaactcggtttgtcttctttacttaaa
gttactgattccaatcgatcatattggatagcccctttaaatacgaagtgttcaaacaat
cttattttgaacgaccttatcgactggtcagcggtgcgtagtctttctagtaaagttcaa
gttgtcaaggacattactatgcttaaaccgcatttattgttgatgtacgatcaggaaagc
atttttgagctttattcctttgaatccctcgctcgtcaggatatgcaaggatgtagtata
gtttgcaaaaggatgccttttaaactaaactactcattgaataaaaagcaatccatgcaa
ataaaaaagccaagtacaagcttacgtctaaatcaagtatatcttaccggtttgtcaaag
tatttgaaagagtcggccttacttcttccttctatactttaccacatggaagctcttttt
ttagcgtctgaatttgcaagtaaacatggcttaaaatgttcattgctaaccatgctgcaa
gctttatcgactgaggatgcttctatggatgacaattacgaccgtttagaatttttgggg
gattcatttttaaaagtttatgcctcttctactgtttttttaaaatatactcatgatcaa
gaataccagttgcatgttcaccgcaaacaaattatcagcaattacaatttatatatgcat
gcaaaaaaaatggaaatatcacgcttcgcattatccgaacctatggtcattcgcaagtgg
tgtcccttcggctttttgagagagaacaaacatggaaagaactatccatcgtttcagcta
ttatcaaaaaaaaggttagcagacttggttgaatccactattggtgcttgcatcttggac
aacggtgttgactcagggcttgaatattgtacaaatttaggtcttgggttactagacgtg
aaaaattggtctgactggaataactttttagacattgacttttacgcgagcttgatttcg
tgtaaagtgtttccttatcacgaacacattgaagatgtcactgggtacacttttaaaaat
aaagcaattttacatttagcttttatacatccaacgatgttgagttcaggcgaggtatcg
ggatcttatcaacaattggagtttcttggtgatgcagttctggaatatttagtcgttcag
tacctatttcataaataccctgagtcatctactggtgaattaaccaattttaagtcattt
ttcgtatgtaatcatagtcttgcatacgtagctttcttacttggtttgcacaaatacctt
gaatatgacaattccgaaatgtttgggttaatttatgagtaccaggagatgattgaagaa
gcaaaatcaaataaagtcccctatttttggcttgaagtggatcctccgaagttcatagct
gatacttttgagtcacttatatgtgccatttatctagattctaaattttcctttgaaagc
cttagatttgtattaccgttattggttgatgtgcttggtgatcctttagatttacataaa
aaaaatctggttttagctaaagtacataagcttctcagtgctcaaggatgctcagattac
aaagttgcccacaaggaagaactggaaataagagaagatgaaaatttcaaattgaaacga
gagagctatatatatcacaccgtttcattcattcggcatgataatgttgtatgcttaggc
acctctcgaaaactaagtagtgcgaaaattagtatgaaaaataaactaaaaggattactc
gataagaactctaatttactgctatactcttgtgattgtgcttttaaagcgacggactgt
gtaaaaactgaaagtggttcaccagagggatag
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