Schizosaccharomyces osmophilus (fission yeast): SOMG_04827
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Entry
SOMG_04827 CDS
T09274
Name
(RefSeq) 5'-3' exonuclease, C-terminal domain superfamily
KO
K15338
holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Brite
KEGG Orthology (KO) [BR:
som00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
som03400
]
SOMG_04827
DNA repair and recombination proteins [BR:
som03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
SOMG_04827
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Gene cluster
GFIT
Motif
Pfam:
XPG_I
XPG_N
XPG_I_2
eIF3m_C_helix
Motif
Other DBs
NCBI-GeneID:
80878293
NCBI-ProteinID:
XP_056039812
UniProt:
A0AAE9WFY8
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Position
3:join(1760440..1760491,1760538..1762210)
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AA seq
574 aa
AA seq
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MGIPGLWDEFRDCFRESNLIEVSTSCWNAEKRCLRIAVDAAIWSVQIQASQGGTNPALRT
LFYRLCHLLEWGIHAIFVFDGPNKPPWKRNRHVRPKVSGNYESMKHLIQLFGMQVWEAPG
EAEAECAKLQRLQLVDYVLTEDVDAFAFGATKVIRCSPAERKSLLNVRIYEMEKISQKLD
INQPGVILIGLMRGGDYHSKGIEHCGLQTAIGAAKLGFGDRLISSDHLDTWRSQLQHCIQ
VNKYNTFGFKRPNFIIDQDFPDPLVKHYYTHPEVSSKETLKLHFSQFDWSQKPDVKALYT
YAQKRFQWVSLQGSIKFINNIAYPLLVFELLHSTVIDSNIYTASHKTRRNKSTGMILEKQ
ITFYPNKILDCEWHIKTNVHDNEANAPLKNQWKSLLEENTSWIPACFIKTAKYARISQFF
GRTNSDLGRLVQKTKRLSLDPEESRNSIHAEREKTTVTKKPAGLLPTNLFSKPRTQFSQI
IPQTTDDSFTDDDLPKIQEILPRSSIKTGNREDQSQPDSRFNKDLTVKSKGHLSKDQFIK
KIYIRESLNGSWKEDIGASGRRKMYENIPIIDLS
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgggaattcccgggttatgggacgaatttcgagattgctttcgtgaatcaaatcttata
gaagtctccacgagttgctggaatgcagaaaaacgctgtttgagaattgctgttgatgca
gcaatatggtcggtacagattcaagctagtcaaggtggtaccaatccggcattaaggacg
ctattttatcgactttgtcatttactcgaatggggtattcacgctatcttcgtcttcgat
ggtccaaacaaacctccttggaaacgaaatcgccatgttcgaccgaaagtctcaggaaac
tatgaatcgatgaagcatctcatccagctttttggaatgcaagtatgggaagctccagga
gaagctgaagctgagtgcgcgaagcttcaaaggttgcaactggtcgattacgtcttgacg
gaagatgttgatgctttcgctttcggagctactaaagttatacgatgtagtcctgcggaa
aggaaatcgttgttgaatgtcagaatctatgaaatggaaaaaatttcccaaaaactcgac
atcaatcagcctggtgttatattgattggcttgatgagaggaggtgattaccattcaaaa
ggtatagagcattgtggccttcaaacagcgatcggtgctgcaaaactaggattcggtgat
cgtttaatttcttctgatcatctagatacctggaggtctcaattacaacactgcattcaa
gtaaataagtacaacacttttggcttcaaacgcccaaatttcatcatcgaccaggatttt
cctgaccctttagtaaaacattattatacacatccagaagtttcttccaaagaaacgttg
aaattacacttttcgcagtttgattggtctcaaaaacctgatgttaaagctttgtatact
tatgctcaaaaacgatttcaatgggtgagcctacaaggaagtatcaagtttataaataac
atagcttatcctttacttgtctttgaacttcttcattctactgttatagactcaaatata
tacacagcctctcataagacacgaagaaacaaatccacaggcatgatattagaaaaacaa
attactttctatccaaacaaaatcctggattgcgaatggcatattaaaacgaacgtacat
gataatgaagcaaatgcaccgttaaagaatcaatggaaatcactattagaagagaacaca
tcatggatccctgcctgctttataaaaactgctaaatatgcaagaatttctcagtttttt
ggaagaacaaattctgacttgggacgtttagtccaaaaaaccaagagactatctttggac
ccagaagaaagtcgtaattccatccatgccgagagggaaaaaacaacagttactaaaaag
ccagcaggtcttcttccaacaaacttgttttcgaaaccacgcacacaattttctcaaata
ataccgcaaactaccgatgattcttttacggatgatgatctaccaaaaattcaggagatt
cttcctagaagctctataaaaacaggaaatagagaagatcaaagccaacccgatagtcgt
tttaacaaagatctgacagttaaatccaaagggcatctttcgaaagatcaattcataaaa
aaaatatacattagagaaagccttaatggaagctggaaagaagatataggagcaagcggg
aggaggaaaatgtatgaaaatatccccattattgacttatcctga
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