Schizosaccharomyces osmophilus (fission yeast): SOMG_04895
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Entry
SOMG_04895 CDS
T09274
Symbol
caf1
Name
(RefSeq) CCR4-Not complex CAF1 family ribonuclease subunit 7/8
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOMG_04895 (caf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_04895 (caf1)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SOMG_04895 (caf1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
SOMG_04895 (caf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNase_H_2
Motif
Other DBs
NCBI-GeneID:
80878360
NCBI-ProteinID:
XP_056039281
UniProt:
A0AAE9WJ07
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Position
3:complement(1914849..1915841)
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AA seq
330 aa
AA seq
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MDTGNASYPPLGMSSMTSQMAPIRDVWATNLEQEMTLIMNLASRYPVISMDTEFPGVVAR
PLGVFKSSGDYHYQTLRANVDTLKIIQIGLALSDEEGNVPPEAFTWQFNFRFNIQEDMYA
PESIELLTKSGIDFKKHQDAGIEPADFAELLIGSGLVLQEGITWVTFHSGYDFAYLLKAM
TQLSLPSEYEEFYKFLCIYFPKTYDIKYIMKSLLNNSKGLQDIADDLQINRIGPQHQAGS
DALLTSRIFFEIRSRYFDGSIDGRMQNQLYGLGTSGSSLWMNTPKPQFRDLPGAQPSPKP
TAPSISSTFANPPASVSLSNSSFRFPPRVI
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggatacagggaatgcatcgtatcctcctttgggaatgagctctatgacttcgcaaatg
gcaccaattcgagacgtatgggcaacaaatctggaacaagaaatgactttgatcatgaac
ttggcctcgcgttatcccgtaatctctatggatacagagtttccaggtgttgtggcccgg
cctttgggagttttcaagagtagcggagattaccattaccaaacgctacgggcaaacgta
gacactttaaaaatcattcaaattggattggctctgagtgatgaggaaggaaatgttccc
ccggaagcattcacttggcagttcaactttcggtttaatattcaggaagatatgtatgct
ccggaaagtattgagcttctcacgaaaagcggaattgattttaaaaagcaccaagatgca
ggaattgagcctgccgattttgctgagctactgattggaagcggtcttgttcttcaggaa
ggtatcacttgggttacctttcacagtgggtacgactttgcatatttgttgaaggccatg
acccagttgtctttgcccagtgagtacgaagaattttataaatttttatgtatttacttc
cctaaaacctatgacattaaatatattatgaagtcgcttctcaataattcgaaaggcctt
caggatattgctgatgatttacaaatcaaccgtataggtcctcaacaccaggctggtagt
gatgctttgcttacctctagaattttctttgaaattcgctctcggtatttcgacggcagt
atcgacggtcgaatgcaaaatcagctatatggtttaggtacttctggcagttctttgtgg
atgaataccccgaaacctcaattccgcgatctgccaggagctcagcctagtcctaagccc
actgctcctagtatctcttctacttttgccaatccgcctgcttcggtttctctcagcaat
tctagtttccgcttccctcctcgagtcatatag
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