Schizosaccharomyces osmophilus (fission yeast): SOMG_04946
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Entry
SOMG_04946 CDS
T09274
Symbol
csl4
Name
(RefSeq) exosome subunit Csl4
KO
K07573
exosome complex component CSL4
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOMG_04946 (csl4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_04946 (csl4)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SOMG_04946 (csl4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
SOMG_04946 (csl4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
Cmr7b-like
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
80878410
NCBI-ProteinID:
XP_056039248
UniProt:
A0AAF0AYG6
LinkDB
All DBs
Position
3:join(2029127..2029492,2029567..2029746)
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AA seq
181 aa
AA seq
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MSLVLPGQTVARGVANGEGTTTKGDFVISTRAGIFDPKTISVRFPEKIEETGILPKVGSL
VLARVTRINVRQATVSISVVDDICVKEEFQGVIHVQDIRASEKNKVKVQNSFRPGDIVRG
LVLSLGDGSAYFLTTARNDLGVIFAQSSETGEQMFPVDYQHMQTESGFTEQRKCAKPVLD
E
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgagtctcgttttgcctggacaaactgtcgctagaggtgttgcaaatggcgaaggcaca
accaccaaaggcgattttgtgatttcaactcgggctggcatttttgatcccaagacaatc
tctgttaggttccctgaaaagatagaagagacgggaatattaccgaaagttgggtctctc
gttttggctcgagtgacaaggattaatgttcgacaggctaccgttagcataagcgttgtg
gacgatatttgtgttaaagaagaatttcaaggagtcattcatgttcaggatattcgtgct
agtgaaaaaaataaagtgaaagtccaaaattctttccgaccaggtgatattgttcgaggt
ttggtgctttctctaggagatggatccgcttatttcttgaccacagcgcgcaacgacttg
ggcgttatttttgcccaatcgagtgaaaccggtgaacaaatgttcccagttgactatcaa
catatgcagacagaatccggattcactgagcaaaggaaatgcgcaaagcccgttttggat
gagtag
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integrated database retrieval system
