Schizosaccharomyces osmophilus (fission yeast): SOMG_05090
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Entry
SOMG_05090 CDS
T09274
Symbol
prp43
Name
(RefSeq) ATP-dependent RNA helicase Prp43
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SOMG_05090 (prp43)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
som03041
]
SOMG_05090 (prp43)
03009 Ribosome biogenesis [BR:
som03009
]
SOMG_05090 (prp43)
Enzymes [BR:
som01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SOMG_05090 (prp43)
Spliceosome [BR:
som03041
]
Complex A
U2 snRNP components
U2 related factors
SOMG_05090 (prp43)
Complex B
SOMG_05090 (prp43)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
SOMG_05090 (prp43)
Ribosome biogenesis [BR:
som03009
]
Eukaryotic type
90S particles
Helicases
SOMG_05090 (prp43)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
HA2_N
AAA_22
SRP54
AAA_19
nSTAND3
AAA_23
AAA_7
Flavi_DEAD
T2SSE
Motif
Other DBs
NCBI-GeneID:
80878553
NCBI-ProteinID:
XP_056035392
LinkDB
All DBs
Position
1:3242202..3244409
Genome browser
AA seq
735 aa
AA seq
DB search
MEPALKKSRSDSKNPYLSHLEDGSDDLESVSSNGLTRRATTVEAVEKAESGPNNPFNNIP
FSDKYFAILDGRRQLPVHQQRDEFLKLYHENQIIVFVGETGSGKTTQIPQFVLYDELPHL
TNSQVACTQPRRVAAMSVAKRVADEMDVKLGGEVGYNIRFEDCSGPNTMLKYMTDGMLLR
EAMNDHTLSRYSCIILDEAHERTLATDILMGLMKRIAQRRPDLKIIVMSATLDARKFQKY
FFEAPLLAVPGRTFPVEIYYTQDPERDYLEAALRTVLQIHVEEGPGDILVFLTGEEEIED
ACRKIALEADDLLREGAAGPLNVYPLYGSLPPNLQQRIFEPTPEDSKSGPGRKVVISTNI
AETSLTIDGIVYVVDPGFSKQKIYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFR
LYTEDAFRKELIEQTYPEILRSNLSSTVLELKKLGIDDLVHFDYMDPPAPETMMRALEEL
NYLACLDDEGSLTPLGRKASDFPLDPNLAVMLIKSPEFYCSNEVLSLTALLSVPSIFVRP
NSARKLADEIRQQFEHPDGDHLTLLNVYHAYKSSEGTSDWCWNHFLSHRALISADNVRKQ
LRRTMERQQVDLISTPFEDKNYYVNIRRALVSGFFMQVAKKSANGKNYVTMKDNQMVSLH
PSCGLSVTPEWVVYNEFVLTTKSFIRTVSSVRPEWLVELAPNYYDLDDFDNNKEVKSALQ
KIYQMAARSKKGSRK
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atggaaccagctttgaaaaaatctcgttctgattcaaaaaatccatacctatctcactta
gaagatggtagcgatgatttggaaagtgtttcttccaacgggttaactagacgtgctaca
acagttgaagctgtagaaaaagcggaaagtggacccaacaatcctttcaataacatacct
tttagcgataaatactttgcaattttagacggaagacgccaattgcctgtgcatcagcaa
agagatgaatttttgaagctttaccatgaaaaccaaattatcgtattcgtcggtgaaacg
ggttctggtaaaaccactcaaattcctcagtttgttttatacgacgaattgccacatcta
accaattcccaagttgcttgtactcaacctcgtcgtgtggcagctatgtcagtcgctaag
cgtgtcgcagatgaaatggatgtcaagcttggaggagaagttggttataacattcgtttc
gaagactgcagtggccccaatacaatgttgaaatatatgactgatggtatgcttctacgt
gaggccatgaatgatcacacattgtcaagatactcttgtattattcttgacgaagcacac
gaaagaactttagctactgatattctgatgggtcttatgaagcgtatagcccaaagaaga
cccgacctgaaaattattgtcatgtctgcaactttagatgctagaaaatttcaaaagtac
tttttcgaagctcctttattggcagttccaggaagaacattccctgtcgaaatttactat
acccaagatcctgaacgtgattatttagaagccgctcttcgtactgtccttcaaatccat
gttgaagagggccctggcgatattcttgttttccttactggtgaagaagaaattgaggat
gcatgccgtaaaattgctctagaagccgatgacttacttcgagagggcgctgcaggtccc
ttgaacgtgtatcctttgtatggttctttaccacctaatttgcaacaacgcatttttgag
ccaacgccagaagatagtaaatctggccctggccgaaaggttgtgatctctacaaacatt
gccgaaacatctcttacaattgacggaattgtttatgtcgttgatccaggattcagcaag
caaaaaatttacaatcctcgtattcgtgttgaatctcttctagtaagtcctattagcaaa
gctagtgctcagcaacgtgcaggtcgtgcaggccgtacccgtcctggtaaatgcttccgg
ctctatactgaagatgctttccgtaaagaattaatcgaacaaacttatccggaaatcctt
cgaagcaatctttcaagtacagtattggaattgaagaagttaggaattgacgaccttgtt
catttcgattatatggatcctccggcacctgagaccatgatgcgtgctttagaagagctc
aactaccttgcttgtttagatgatgagggtagtttgactccacttggccgcaaggcctca
gactttcctcttgatcccaacttagctgttatgttaatcaagagtcctgaattctattgc
tccaacgaagttctgtctcttaccgcgcttttatctgttcccagtatattcgtgcgtcca
aattctgctagaaaacttgctgatgaaattcgccagcaatttgagcaccctgatggtgat
catttgactttattaaatgtatatcacgcttacaagtccagtgaaggtacttctgattgg
tgctggaatcactttttgtcccatagagctttaattagtgctgacaatgttcgaaagcaa
cttagaagaacaatggaacgacaacaagtcgatttaatttccactcctttcgaagacaaa
aattattacgtgaatatacggagagctcttgttagtggctttttcatgcaagttgctaag
aaatccgctaatggtaaaaattatgtaaccatgaaggataaccaaatggtatcccttcat
ccttcttgcggattgtcggttactccagagtgggttgtatacaatgaatttgttttaacg
actaagagcttcattcgcactgtttcttctgttcgacctgaatggttggttgaattggct
cccaactattacgatttggatgattttgacaataacaaagaggtaaagtcagcacttcaa
aaaatataccaaatggccgctagatccaagaagggatctcgaaagtaa
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