Shewanella oneidensis: SO_0360
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Entry
SO_0360 CDS
T00099
Symbol
rpoZ
Name
(GenBank) DNA-directed RNA polymerase omega subunit RpoZ
KO
K03060
DNA-directed RNA polymerase subunit omega [EC:
2.7.7.6
]
Organism
son
Shewanella oneidensis
Pathway
son03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
son00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SO_0360 (rpoZ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
son03021
]
SO_0360 (rpoZ)
03400 DNA repair and recombination proteins [BR:
son03400
]
SO_0360 (rpoZ)
Enzymes [BR:
son01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SO_0360 (rpoZ)
Transcription machinery [BR:
son03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SO_0360 (rpoZ)
DNA repair and recombination proteins [BR:
son03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SO_0360 (rpoZ)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb6
DUF1599
Motif
Other DBs
NCBI-ProteinID:
AAN53445
UniProt:
Q8EJU7
LinkDB
All DBs
Position
complement(370404..370682)
Genome browser
AA seq
92 aa
AA seq
DB search
MARVTVEDAVEQIGNRFDMILVAARRARQIAVQGKDPMVEEMNDKPTVIALREIELGLVN
AHTLDADERQTVREREAAEIAAVAAIAEGRSL
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcgtaactgtagaagacgccgtagaacaaatcggcaaccgttttgatatgatc
ctggttgcggcgcgtcgtgctcgccaaatcgccgtgcagggtaaagaccctatggttgaa
gagatgaacgacaagccaacggttatcgccctgcgtgaaatcgaactaggtttagtgaat
gctcacactttagatgctgatgagcgtcaaaccgtgcgtgagcgcgaagctgctgaaatc
gcagctgttgcagccatcgctgaaggccgttcactataa
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