Shewanella oneidensis: SO_0407
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Entry
SO_0407 CDS
T00099
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
son
Shewanella oneidensis
Pathway
son03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
son00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SO_0407 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
son03019
]
SO_0407 (rhlB)
Enzymes [BR:
son01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SO_0407 (rhlB)
Messenger RNA biogenesis [BR:
son03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SO_0407 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
AAN53490
UniProt:
Q8EJQ5
LinkDB
All DBs
Position
423730..425049
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AA seq
439 aa
AA seq
DB search
MSQTHLSNQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKT
MAFLVATFNHLLSSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYG
GESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIR
FLFRRMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQ
EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILE
QFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFA
CEEYALNLPAIETYINHSIPVSNYDRDALLDDIPSPVKIHRKHPAGARNLRERSGAGRTP
GAHRSGGRPPRHDRTRRQP
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaacacatttatcaaatcaaaaatttgccgacctacctctacatcctgaggta
aaacaggcccttgccgagaacggctttgaattttgtacgccgattcaggcgttatcatta
cccgtattacttcaatcaaaagatatcgctggccaagctcaaacgggcacaggcaagaca
atggcgtttttggttgccacatttaaccatttattgtcgtcctccattcctgaagggcgc
caattaaatcaacctcgtgccattatcatggcacctacccgtgaattagcgatccaaatt
gctaaggatgcgattttactcgcgaaacatactcgcctaaaggtgggtattgtttatggt
ggcgagagttatgatgttcaacgtaaagtgctcgaccaaggtgttgatatcttaatcggt
actaccggacggattatcgattatgtgcgtcagggcattatcaatttaaatgcgattcaa
gctgttgtgttagacgaagccgatcgtatgtttgacctcggttttatcaaggatattcgt
tttctattccgacgtatgcccaatgccgatcagcgcctgaatatgttgttttcagccacg
ctttcgatgaaggtgcaagagttggcctatgatcatatgaatgatccagtgaaagtcgaa
atcgcacctgaagaaaaaacctccaagaacatcaaagaagaaattttctatccttcccaa
gaagataagatgcgtttactgctaacgctgattgaagaagactggcctgagaaagccatt
gttttttcaaacaccaagcatagctgtgaaaacttatggtcttggcttgagggtgatggc
caccgtgtgggtctgcttacgggcgatgtgccacagaagaaacgtattcgaatccttgaa
caattcactcaaggccaattagatattttggtcgcgactgacgttgccgcacgtggtcta
catatttccgatgtttcccatgtgtacaattatgatttacctgatgattgtgaagattat
gtccatcgtatcggtcgtactggacgcgcgggtaacaagggcgtatcagtcagttttgcc
tgtgaggaatatgcactaaacttgcctgcgattgaaacttatatcaatcactctattcct
gtgagtaattatgatcgcgatgcgctgctcgatgatattccatcgccggtcaagatccac
cgtaaacacccagcgggtgcccgtaatttacgtgagcgctcaggagcgggtcgaactcca
ggtgctcatcgcagtggtggtcgtccgcctcgccatgacaggacgcgtagacagccgtaa
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integrated database retrieval system
