Shewanella oneidensis: SO_0588
Help
Entry
SO_0588 CDS
T00099
Name
(GenBank) small conductance mechanosensitive ion channel protein MscS family
KO
K22051
miniconductance mechanosensitive channel
Organism
son
Shewanella oneidensis
Brite
KEGG Orthology (KO) [BR:
son00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
son02000
]
SO_0588
Transporters [BR:
son02000
]
Other transporters
Pores ion channels [TC:
1
]
SO_0588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MscS_TM
MS_channel_2nd
MS_channel_3rd
MS_channel_1st
MscS_porin
Motif
Other DBs
NCBI-ProteinID:
AAN53668
UniProt:
Q8EJ80
LinkDB
All DBs
Position
complement(613121..616324)
Genome browser
AA seq
1067 aa
AA seq
DB search
MPRILLFVIAFFSFSLHANSPLQLDKRLGLNNQNQQQNISIDDQITELKNNIDRLAANAS
SFQQAQLDFEKNKKVINQGLKEAAVQLKLDKGTDLNQQASMAYLRLSELKESETALGNQV
NELLQRHNLLPSVIANARQNVLQNKKTELAPIDTPTGELQQTQRIFFEQSLATHEAELAS
SQKRIELTQLQLQLVRQQLSQQEAFIETINKVINKQRQRQTDATLAKNLVDTAKVVDPVT
RNIADTNQIYGQKLQTLTLQINNVVEQQEQAELQYQSQAKQLANIQEQITWVKMNSAFGE
RFLQMLQSLPKPPNHEKLQTLIADARLDRYHLEQQQALNEQELEQTNRYSEGQIKLLRSQ
QALLTQLMQSYDQYLSELGKLKVNYQQLSQQHLTLKNTLNEHLFWVPNAASINKLWLTDV
QRSALWLIQEAQWGQLGKAWQEQNDYWSWWIILLVLCLVIQDLIKPKFNRLLGHYATYVG
NVTQDKFIYTFKSLALSLGYALIKPLPIVAAGWIFYQSDRNFVQAVGMGILAIGLVYLLY
RLIFILALDKGVLVGHFKRPSKLIQAGQLRLKHFVFVASPLLGIMGFTEILDASLIRNSI
GRGAFICFCVILFLLYKDVLLLSRQNTDTKKDGKNKRLIQKMLWALLISVPLLSAVLAFR
GYYFTAFQMLLQLQLSIVLGLSFLLLYQLIKRWMLIERRRIAFDRAKAKRAERLAQREKG
ETHHASNDGLDTYEEPVVDLETISSQSLGLVRSLLLLAFLASLIGLWTQTHTALFSFLDG
ITLWTTNTSINGVEQQLPITMKSLLFGLIIVGFSLMIATNLPGLLELMILQRLDLTPGTG
FAITTVSRYLVVFLGLLIGFSNLGMEWSKLQWLIAALSLGLGFGLQEIFANFISGLIILF
EKPVRIGDTVTIRDLTGTVSKIQIRATTIIDWDRKEIIIPNKAFITEQLINWSLSDPITR
VIVHVSVARDSDPAKVEATLYQAVQECEDALANPEPEVWFAGFGKHTQDYEVRAYAKDMS
ARWPLRHDLHKRITRKLKENNLELAYPQMEIHLKNGQNRDQVGIIRS
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgccacgtattttattgttcgttattgcttttttctctttttctctccatgccaattcg
cccttgcagttggataagcgccttggtttaaacaaccaaaatcaacaacaaaatatcagc
attgacgatcaaattactgaacttaaaaacaacattgataggctggcggcgaatgcgagt
agctttcagcaggctcaacttgattttgaaaaaaataaaaaggtcattaatcaaggactc
aaagaggcagcagtccaacttaaactggataaaggcacagatcttaaccagcaagcctca
atggcttatttgcgcttgtctgagttaaaagagagcgagaccgcccttggtaaccaagtc
aacgagctattgcagcgccataacctgctgccctccgtcattgccaacgctaggcaaaat
gtgctgcaaaataagaaaacggaattggcgcctatcgacaccccaacgggtgaattgcag
caaacgcagcggatttttttcgaacaaagccttgccacccatgaggctgaactcgccagc
agccaaaagcgcatcgaactcacacaactacagttacaactggtgcgccaacaactgagc
caacaggaagcctttattgaaaccatcaataaggtgataaataagcagcgccagcgacaa
accgatgcaaccttggccaaaaatctcgtcgatactgcaaaagtcgtcgacccagttacg
cgcaatatcgccgacaccaatcagatctatggccaaaaactccaaaccttaaccttgcaa
atcaataatgtggttgagcaacaggaacaggctgaactgcaatatcaatcccaagctaag
cagttggccaatatccaagagcaaatcacttgggtcaaaatgaactccgcctttggtgaa
cgtttcttgcaaatgttgcaatcgctgcccaaaccaccaaaccatgaaaaactgcagacc
ctgatcgctgatgcacgtctagatagatatcacctagagcaacagcaagcgctcaacgaa
caagaactcgagcagaccaatcgctacagcgaggggcaaattaagctactgcgctcacaa
caggcattgctcacacagttaatgcaaagttatgaccaatatctgagtgaactaggcaaa
ctcaaagttaattatcagcagcttagccaacaacatctcacgctaaaaaatacgcttaat
gagcatcttttttgggtacctaatgccgcgagcattaacaaactttggctaaccgacgtc
caacgcagcgccctgtggcttatccaagaggcacagtgggggcaacttggcaaagcttgg
caagagcaaaacgactattggtcatggtggatcattctgttggtgctttgtttagtgatc
caagatttaattaaacctaaattcaatcggttacttggtcactatgccacttatgtggga
aatgtaactcaggataaatttatctataccttcaaatccttagccttaagcttaggttac
gccttaatcaaacctttaccgatagtggcggctggatggatattctatcaatctgaccgt
aactttgtgcaggccgttggcatgggaattttagcaataggattagtttacctattgtat
cgcttaatttttattcttgccctcgataaaggcgtcttggtcggccacttcaagcgcccc
tcaaaacttatccaagcgggtcaattgagactaaaacactttgtctttgtcgcgagcccc
ttacttggcattatgggatttactgaaatcctcgatgcatcccttatccgtaacagcatt
ggccgcggtgcatttatctgtttttgcgtcattttattcttgttatacaaggatgttttg
ctcctgagccggcaaaataccgacactaaaaaagacggcaagaacaagcgattaatccaa
aaaatgctttgggccttactgatttcagtaccattactgagcgcggtgctagcgtttaga
ggctactacttcaccgccttccaaatgttgctgcaactacagttatctattgtattgggg
ttaagttttttacttctctatcaattaattaagcggtggatgttgattgaacgccgccgt
attgccttcgatcgggcgaaagcgaaacgggcagagcgtttagcccagcgggaaaaaggc
gaaacacaccatgcctcaaacgatggcctagacacctacgaagagccagtggtcgatctc
gaaactatttcgagtcaatccctcgggttagtccgctctttactgctgttagctttttta
gccagtttgattggcctgtggacgcaaacccatacggcgctgttttccttccttgatggc
attaccctctggaccaccaataccagcatcaatggggttgagcagcagcttccgattacg
atgaaatcgctgttatttggcttaatcatcgttggcttttcgctgatgatcgccaccaat
ttacccggtttgcttgagctgatgatcttgcaaagactcgacctgacacccggcactggc
tttgccatcacgaccgtaagccgttatttggtggtgtttttaggtctattgattggcttt
tcgaaccttgggatggaatggtcaaaactgcaatggttgattgccgcgctgtcactgggt
ctcggttttggtttgcaggagatttttgccaactttatttcgggtctgattattctgttc
gagaaacctgtgcgtattggcgacaccgtcaccattcgcgatctcacggggactgtcagt
aaaatccagatccgcgccaccacgattatcgactgggatagaaaggaaattatcattcca
aacaaggcctttattactgaacagttaattaactggtcactgtcagaccctatcactcgg
gtgatagtccatgtgtcagtcgcccgtgattcagatcccgccaaagtcgaggcgacgctc
tatcaagcggtacaagaatgcgaggatgcgctagctaatcctgagcctgaagtgtggttt
gcaggctttggtaaacatacccaagactatgaagttcgcgcctacgccaaagatatgtca
gcacgttggccgcttcgccacgacttacataaacgtattactcgtaagcttaaagaaaac
aatttagaacttgcctatccgcaaatggaaatccatcttaaaaatggccagaatcgcgat
caggtcggcataatccgcagttaa
DBGET
integrated database retrieval system
