Shewanella oneidensis: SO_0639
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Entry
SO_0639 CDS
T00099
Name
(GenBank) collagenase
KO
K01387
microbial collagenase [EC:
3.4.24.3
]
Organism
son
Shewanella oneidensis
Brite
KEGG Orthology (KO) [BR:
son00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
son01002
]
SO_0639
09183 Protein families: signaling and cellular processes
02042 Bacterial toxins [BR:
son02042
]
SO_0639
Enzymes [BR:
son01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.24 Metalloendopeptidases
3.4.24.3 microbial collagenase
SO_0639
Peptidases and inhibitors [BR:
son01002
]
Metallo peptidases
Family M9
SO_0639
Bacterial toxins [BR:
son02042
]
Toxins that damage the extracellular matrix
Hyaluronidases/Collagenases
SO_0639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M9
Peptidase_M9_N
PPC
Motif
Other DBs
NCBI-ProteinID:
AAN53717
UniProt:
Q8EJ34
LinkDB
All DBs
Position
complement(664604..667717)
Genome browser
AA seq
1037 aa
AA seq
DB search
MKQTLLFAAISLAIATPSLAHNHSVQDPNNSVKAKNTAIPSTLAPLASPSAPLNIDVSHR
PLLPTDSLIASPNEPTHSEYLDAHSSQQQALLENSPRSKVSRFAANADCSNFVGKSGQAL
LDELTQSTPQCVGKLFNLKGSDASSVFSEANVSTVANAIAAKAPQYTGVDNQGIESHIYF
VRAALYVQFYHPSDVPAYSSAVKNNLKSALNALFANNAIWTLSDANASVLKEALILIDSA
ELGADFNFVTLKVLNDYNSTWQASFAMNAAANTVFTTLFRAQWNTDMQALFARDHAILDA
LNQFQLNHRDLLGTNAEYVLVNAVRELSRLYYIDAMRPKVTQLVKNILNSTSKNDSSRVL
WFAAAEMADYYDRSNCNAYQICGFKAQLAADSLPFNWKCSDSLKIRAQDLYQDQAKWACG
VLSQQESHFHTILETGMQAVAQDNNDDLELVIFGSSSEYQSLANSIFGINTNNGGMYLEG
SPAGLKNQARFIAYEAEWRQPDFHVWNLQHEYVHYLDGRYNLFGDFSRSVSANTIWWIEG
LAEYISYRDANPAAIAMGETGEFMLSTIFKNTYDSGQDRIYRWGYLAVRFMFENHRDDVR
QILTFLRNNQYAEYQAFMDSIGTRYDNEWRGWLTSGLSTTNNGIVDKGPSDEQANASGRE
GNWAGPAGTISKDYSPCQVSNEAYRYSESASLSLEVPMECIDAKQGRASFSFANSDRSAQ
DIWIKIGGGWGDADIYYDSRGWASAEKNQGYGIGNGNYQVIKVSLNPNELWHYITLEGDF
GGVDMLVSTSELVADTDPDLGDGDTGGEVPSNCGAATINYGKLTLGKDECISGGRNSFYF
WVDADNSQFSVSTTGGTGDANIYFNANTWASASNAQASSVNQGNKESFSFTANRGWRYIT
VDTASEFSGVTFNLKAGGGGSSVPNQIANACATKSPVSYTQLTPGDAVCSANGRNDYYLW
IPEGTSQLEVRSAHGTGDVSLYSGRSWANAQQYEAASTNAGSTKEQIKVNNPSAGWYYIT
LQSEGQSAGVALQVDLR
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagactctacttttcgcggctattagcttagccattgcaacaccttcgctcgcc
cataaccattcagtacaagacccaaacaattcagtaaaagcgaaaaacacagcaatccct
agtacgctagcaccgttagcttcaccgtcagcgccactcaatattgatgtcagccatcgg
ccgttattgcccactgacagtttgatagcctcacctaacgagccaacacactctgagtac
ctcgatgcacattcttcacaacagcaagcgttgctcgagaactctccgagatcaaaagtc
agccgctttgccgccaatgccgactgtagtaactttgttggtaaatcgggccaagccctg
ttagatgagctaacgcaatccacgccacagtgtgtcggtaaactatttaatctcaaggga
agtgacgcaagcagcgtatttagtgaagcgaatgtatccacagttgccaatgcaattgca
gccaaagcgcctcaatacacaggcgtggataaccaaggtattgagtcacatatttacttt
gtgcgcgccgcgctttatgtgcagttttaccaccccagcgacgtacccgcctacagcagc
gcggtgaaaaacaatttaaaatcagcgcttaatgctctctttgccaataacgccatttgg
acactctccgatgccaatgccagcgttctcaaagaagcactgatcctgattgattccgcc
gaactgggggctgattttaactttgtcaccctcaaagtgctcaatgactacaacagcaca
tggcaagccagctttgcgatgaatgcggccgccaataccgtgtttaccaccttattccgc
gcccagtggaatactgacatgcaggcactgtttgcccgagatcatgccattttggatgcg
ctcaaccagttccaacttaaccacagggacttactcggcaccaatgctgaatatgtttta
gtcaatgctgtcagagagttatccagactgtactacattgatgccatgcgccctaaagtc
acccaattggtcaaaaatattttaaacagcaccagcaaaaatgattccagtagagtgctg
tggtttgcagctgccgagatggcagattactacgatcgcagcaattgtaatgcttaccag
atctgcggtttcaaagcacaattggccgccgatagcttaccgttcaattggaaatgctcc
gacagcctcaagatccgcgcccaagatctttaccaagatcaagctaaatgggcatgcgga
gtattaagtcagcaagaaagccatttccacacgatactcgaaacgggaatgcaggcggtc
gcacaggataacaatgatgatttagagctggtgatttttggcagctcgtcagaatatcaa
tcccttgccaacagcatttttgggatcaataccaacaatggcggcatgtatttagaaggc
tctcccgctggacttaaaaaccaagcgcgttttattgcctatgaggccgagtggcgacaa
cctgattttcatgtgtggaacttacagcatgaatacgtgcattacctcgatggccgctat
aacttgtttggcgacttcagccgcagcgtatccgccaacacaatttggtggattgaagga
ttagcagaatatatttcatatcgagatgccaaccccgctgccatcgccatgggtgaaacc
ggtgagtttatgctctcaaccatctttaaaaacacctatgactctggccaagaccgcatt
taccgttggggttacctcgccgtacggttcatgtttgaaaaccaccgcgatgatgttcgc
cagatcctaaccttcctgcgtaataaccaatatgctgaatatcaagcatttatggattcc
attggcacccgctatgacaacgaatggcgcggctggctcaccagcggtttaagcactacc
aacaatggtattgtcgataaaggcccaagtgatgaacaggctaatgccagtggtcgcgaa
ggcaactgggcaggccccgcgggcaccatcagcaaagattactcgccctgccaagtcagt
aacgaagcataccgctacagtgagtctgccagtctcagtcttgaggtacccatggagtgt
attgatgccaaacaaggccgagccagctttagctttgccaatagtgaccgctcggcccaa
gatatttggatcaaaattggcggtggttggggagatgccgatatttattacgattcaagg
ggatgggcaagtgctgaaaaaaatcagggctatggcatcggcaacggtaattaccaagtg
atcaaagtgagcctaaaccccaatgaactttggcactatatcaccctagaaggggatttt
ggtggtgttgatatgctggtcagtaccagtgagttagttgccgataccgatcccgactta
ggtgatggcgatactggcggtgaagtgcccagcaactgtggtgccgcaaccatcaattac
ggcaagctaaccctcggaaaagatgaatgtatcagcggtggtcgtaatagcttttatttc
tgggtcgatgctgacaacagccaatttagtgtcagcacaaccgggggaacaggcgatgcc
aatatttactttaatgccaatacttgggcaagtgcgagcaatgcccaagccagcagtgta
aatcaaggcaacaaagagtcctttagttttacggcaaaccgtggctggcgatatatcacg
gttgataccgcgagtgaatttagtggcgtgaccttcaaccttaaagccggtggtggtggc
agtagcgttcctaatcaaattgccaatgcctgtgcgactaaatcacccgtgagctatacc
caactcacgccgggtgatgccgtctgcagcgccaatggccgtaatgactattatctttgg
attccagaagggacaagccaactagaagtacgctcggcccacggaactggagatgtcagc
ctttactcgggtcgcagctgggccaatgcccagcaatatgaagccgcctcaacaaacgct
ggcagcactaaggaacaaatcaaggtcaataatcccagtgctggctggtattacattacg
ctccaaagtgaaggccaaagtgcaggtgtggcccttcaggtagatttacgctaa
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