Shewanella oneidensis: SO_1206
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Entry
SO_1206 CDS
T00099
Symbol
truB
Name
(GenBank) tRNA pseudouridine55 synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
son
Shewanella oneidensis
Brite
KEGG Orthology (KO) [BR:
son00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
son03016
]
SO_1206 (truB)
Enzymes [BR:
son01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
SO_1206 (truB)
Transfer RNA biogenesis [BR:
son03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SO_1206 (truB)
Prokaryotic type
SO_1206 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
AFV73523
UniProt:
K4PSE0
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All DBs
Position
1251130..1252083
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AA seq
317 aa
AA seq
DB search
MARRSKGRFIDGIVLLDKATGMSSNFALQRVKRFFNANKAGHTGALDPLATGMLPICLGE
ATKFSQHLLDSDKRYLVTAKLGQRTDTSDSDGEVVQTRPLEFTQDQLMSALAHFRGDTLQ
VPSMYSALKYQGQPLYKYAREGIEVPREARPITVFELNFISLEGDELTLDIHCSKGTYIR
TIIDDLGEMLGCGAHVIMLRRTQVAHYPYEKMVSLEQLEALVVKAQEQQLDPSSLLDALL
LPMDTAVADFPEVNVPEASAAYLMQGQAVRVAGLEADKLVRITLGAEQRFVGIGSMNEDG
LLAPKRLIVIHDEPKAP
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggcaagacgttcaaagggccgctttatcgatggtattgtattgttggacaaagccact
ggcatgagctccaactttgcattacagcgggtaaagcgcttttttaatgcaaacaaagca
ggccatactggtgcgctcgatcctctggcgacgggcatgctgccaatctgtttaggcgaa
gcgactaagttttcgcagcatttgctggattcagataaacgttatctggtgacggcaaaa
ctgggacaacgtaccgataccagcgactctgacggcgaagtggtgcagacgcgcccactt
gagtttactcaagaccagctgatgtcggctctagcgcattttcgtggtgataccttgcaa
gtgccttcgatgtattcggcgctcaaatatcaaggccagcctttgtataagtatgcccgc
gaaggcattgaagtgccccgtgaggcacgccctatcaccgtatttgagctgaactttatc
agtttagaaggtgatgagctgaccttagacattcattgctctaagggaacttatattcgc
actatcattgacgatttaggtgaaatgctcggctgtggtgctcacgtcatcatgctgcgt
cgcactcaagtggcgcattatccctacgaaaaaatggtctcccttgagcagctagaagcc
ttagttgtaaaggcgcaagaacaacagcttgatccaagtagtttgttggatgctctactg
ctgccaatggatacagcggttgcagactttccagaggtgaatgtgccagaggccagcgct
gcgtatttaatgcaagggcaggctgtgcgagtagcgggcttagaggctgacaaacttgta
aggattacattaggtgctgagcagcgttttgttggcatcggttcgatgaatgaggatggt
ttgctagcacctaagcgacttatcgtgatccacgatgagcctaaagcaccttag
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