Shewanella oneidensis: SO_1284
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Entry
SO_1284 CDS
T00099
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma-70 factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
son
Shewanella oneidensis
Pathway
son02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
son00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SO_1284 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
son03021
]
SO_1284 (rpoD)
Transcription machinery [BR:
son03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SO_1284 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AAN54351
UniProt:
Q8EHE1
LinkDB
All DBs
Position
complement(1335572..1337422)
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AA seq
616 aa
AA seq
DB search
MDHTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVFEEAP
DADDMMMSEDNTDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEIVIA
KRIEEGINTVQSSVAEYPQAIAMILEQYDQYEADELRLSDIISGFVNPDEEDLGPTATHI
GSELSEEDLEDEDDEEDDEDEDGDGDGDDDGNKGPDPEEARERFSQLRTAYESALKIIDA
KGREHPESIQALFEIGEIFKEFRLVPKQFDRLVKSMRSMMDRVRVQERLLMKLCVEQAKM
PKKNFVKFFTGNETNLDWFEAEKTSNKPYAEGLRMVEEDVQRCRSKLAAIEEETGLVIAA
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PSPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATS
ESLKSATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSEILKSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggatcatactccgcagtcgcaactcaagctgttgcttgccaaaggtaaagagcaaggt
tacttaacctatgcagaagtgaacgaccacttacctgcagacatggtcgattctgaccag
atcgaagatattatccagatgataaatgacatgggtattcgggtattcgaagaggctccc
gacgccgatgacatgatgatgtcggaagacaacacagacgaagatgcagcagaagaagcc
gcagcagcccttgccacggtagaaagtgagcttggccgcaccacagaccctgtgcgtatg
tacatgcgcgaaatgggtaccgttgaactgctgactcgcgaaggcgaaattgttatcgcc
aagcgcatcgaagaaggcattaacacagttcaaagctctgtcgccgagtacccacaagcg
atcgccatgatccttgagcagtacgaccagtacgaagccgacgaactgcgcctgtctgat
attatctctggatttgttaaccctgacgaagaagacctcggtccaaccgcaacccacatc
ggttctgaattatcagaagaagatcttgaagatgaagatgacgaggaagacgatgaagac
gaagacggtgatggcgacggtgatgatgatggcaataaaggccccgatcctgaagaggct
cgtgagcgttttagccaactaagaactgcctacgaaagcgcgcttaaaattattgacgcc
aaaggccgtgaacatcctgagtcgattcaagcactgtttgaaatcggcgagattttcaaa
gagttccgcttagtacctaagcagttcgatcgcttagtgaaaagcatgcgttctatgatg
gaccgtgttcgcgtacaagagcgtctactaatgaagctttgtgtcgaacaggccaaaatg
ccgaagaaaaattttgttaagttcttcacaggtaatgagaccaacctcgattggttcgag
gccgaaaaaacctcaaacaaaccttatgccgaaggcttaagaatggttgaggaagacgta
caacgttgccgtagcaagctggccgccatcgaagaagaaaccggtttagtcattgccgcg
attaaagatattaaccgccgtatgtcaatcggtgaagccaaggctcgccgtgcgaagaaa
gaaatggttgaggcaaacttacgtttggttatttctatcgccaagaaatacaccaaccgt
ggcctgcaattcttggacttgatccaagaaggtaatatcggtctgatgaaggccgttgat
aaatttgaatatcgccgtggttataagttctcgacctatgcaacttggtggatccgtcag
gcaatcacccgctcaatcgcggaccaagcccgtacgatccgtattccagtacatatgatc
gaaacgatcaacaagctgaaccgtatctctcgccaaatgctacaggaaatgggccgtgaa
ccctcacctgaagaactggcagagcgtatgatgatgccggaagataagatccgtaaggta
ctgaaaatcgctaaagaacctatctccatggaaaccccaatcggtgacgatgaagattcg
catttaggcgattttatcgaggatactaccctcgaattaccactggacagcgccaccagc
gaaagcctgaagagcgccacccatgaggtattagcaggcctaacagcccgtgaagcaaaa
gtgctgcgcatgcgttttggtatcgatatgaataccgaccacacacttgaagaagtgggt
aagcaatttgacgtgacccgtgaacgtattcgtcaaattgaagcaaaagcactacgtaaa
ctgcgccacccttcacgctcagaaatcttaaagtccttcttagacgaatag
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