Shewanella oneidensis: SO_1797
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Entry
SO_1797 CDS
T00099
Symbol
hupB
Name
(GenBank) histone-like DNA-binding protein HupB
KO
K03530
DNA-binding protein HU-beta
Organism
son
Shewanella oneidensis
Brite
KEGG Orthology (KO) [BR:
son00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
son03032
]
SO_1797 (hupB)
03036 Chromosome and associated proteins [BR:
son03036
]
SO_1797 (hupB)
03400 DNA repair and recombination proteins [BR:
son03400
]
SO_1797 (hupB)
DNA replication proteins [BR:
son03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
SO_1797 (hupB)
Chromosome and associated proteins [BR:
son03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
SO_1797 (hupB)
DNA repair and recombination proteins [BR:
son03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
SO_1797 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
VWA_3
Lmo2446-like_N
Motif
Other DBs
NCBI-ProteinID:
AAN54850
UniProt:
Q8EG16
LinkDB
All DBs
Position
1886742..1887014
Genome browser
AA seq
90 aa
AA seq
DB search
MNKSELIEKIASGADISKAAAGRALDSFIAAVTEGLKEGDKISLVGFGTFEVRERAERTG
RNPQTGEEIKIAAAKIPAFKAGKALKDAVN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaatctgaactaatcgagaaaatcgcttctggtgctgacatttctaaagccgct
gccggccgtgcactggattcttttatcgcggctgtgaccgaaggtctgaaagaaggcgat
aaaatttctcttgttggttttggtacttttgaagtgcgtgagcgtgctgagcgtactggt
cgcaacccacaaacgggtgaagaaatcaaaatcgcagcagcaaaaattccagcattcaaa
gctggtaaagctctgaaagacgctgtcaattaa
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