Shewanella oneidensis: SO_1893
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Entry
SO_1893 CDS
T00099
Symbol
liuE
Name
(GenBank) 3-hydroxymethylglutaryl-CoA lyase LiuE
KO
K01640
hydroxymethylglutaryl-CoA lyase [EC:
4.1.3.4
]
Organism
son
Shewanella oneidensis
Pathway
son00280
Valine, leucine and isoleucine degradation
son00650
Butanoate metabolism
son00907
Pinene, camphor and geraniol degradation
son01100
Metabolic pathways
son01120
Microbial metabolism in diverse environments
son04146
Peroxisome
Module
son_M00036
Leucine degradation, leucine => acetoacetate + acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
son00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
SO_1893 (liuE)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
SO_1893 (liuE)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
SO_1893 (liuE)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
SO_1893 (liuE)
Enzymes [BR:
son01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.4 hydroxymethylglutaryl-CoA lyase
SO_1893 (liuE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMGL-like
DUF4881
Motif
Other DBs
NCBI-ProteinID:
AAN54945
UniProt:
Q8EFS3
LinkDB
All DBs
Position
complement(1989482..1990429)
Genome browser
AA seq
315 aa
AA seq
DB search
MSAQDLSNLSATSLSATSDSVSLFEMGPRDGLQNEAAVPTQAKVALIEALANAGVKRIEA
GSFVSPKWVPQMADSGEVLRQIRRQAGVVYSALTPNVKGLELALDAKASEVAIFGAASQS
FSQRNINCSIEESIERFIPLMDMAKAANIPVRGYVSCVLGCPYEGEIAASEVARVSEILY
KMGCYEISLGDTIGVGTPLKARKMLQAVMERVPVEKLALHFHDTYGQALANITACLDLGV
RSFDASVAGLGGCPYAKGASGNLASEDLVYMLHGLGLKTGIDLEKLALAGFGISKQLNRL
NGSKVANAILQGAKA
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcgcaggatctttcgaacttaagcgcgacctcgttaagcgccacctcggatagc
gtcagcttattcgagatggggccccgtgatggattgcagaatgaagcagccgtcccgaca
caggccaaagtcgccttgattgaagcccttgccaatgcaggcgtgaagcgaattgaagca
ggcagttttgtgtcccccaaatgggtgccacaaatggccgatagcggcgaagtattgcgc
caaattcgccgtcaagcgggcgtggtttacagcgccctcacgcctaatgtcaaaggctta
gagctggcgctggatgcaaaagcttccgaagttgctatctttggtgcggcgtcgcaaagc
tttagccaacgcaatatcaactgttcgattgaagagtcgattgaacgctttatcccgttg
atggacatggcaaaagctgccaatatcccagtacgtggctatgtgtcctgcgttttaggt
tgcccctatgaaggggaaatcgcggcgagtgaagtggcaagagtgtctgaaatcctttac
aaaatgggctgttacgaaatttcgctcggtgacactatcggtgtaggcacgccgttaaaa
gcccgtaaaatgctgcaagccgtgatggagcgagtgccggttgaaaagctcgctctgcac
ttccacgacacctatggccaagcattagccaatattaccgcctgcctcgatttaggcgtg
cgcagctttgatgcctcagtggcgggccttggcggttgcccctacgccaaaggtgcgtct
ggcaatctggcgagcgaagacttggtctatatgctccacgggctcggcttgaagacgggt
atcgatttagaaaaactggcattagcgggttttgggatcagcaaacaattaaatcgtctt
aatggctctaaagtcgccaatgcaatcttgcagggcgccaaagcctag
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