Shewanella oneidensis: SO_2147
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Entry
SO_2147 CDS
T00099
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V alpha subunit RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
son
Shewanella oneidensis
Pathway
son03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
son00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SO_2147 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
son03400
]
SO_2147 (recD)
Enzymes [BR:
son01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SO_2147 (recD)
DNA repair and recombination proteins [BR:
son03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SO_2147 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
Viral_helicase1
UvrD_C_2
SH3_13
Helicase_RecD
AAA_11
UvrD-helicase
AAA_22
AAA_16
DEAD
SLFN-g3_helicase
AAA_28
UvrD_C
nSTAND3
ResIII
PhoH
AAA
DUF7508
Terminase_6N
Flavi_DEAD
AAA_17
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AAN55192
UniProt:
Q8EF46
LinkDB
All DBs
Position
complement(2253515..2255686)
Genome browser
AA seq
723 aa
AA seq
DB search
MNHSTDTNSADMNNATALAANWYNAGALRLKAPLTELLKYWEKERLITALDRHFALEMAR
LHPNDAQEPLFMLLCALLSQQLSAQHTCLVLEYIVPTNPMAEPINRCQIRLSLTELIDAL
QHFDAIGAPNSNKPLIFEDGRLYLERYHHFETQVASALTRLSAAALSLTPSQPLASDNQS
LLQLRRQLDCLFPSAAHTVEANIDWQKVATATALGNKLAVITGGPGTGKTTTVTKLLLLQ
QLGTPKQIRLVAPTGKAAARLSESIKASKARLEQELQQASKENPQENQVLLTALSRIPEE
ASTLHRLLGVIPNSAHFRHHQGNPLRLDLLIVDEASMVDLPMMYKLLSALPEHAGLILLG
DQDQLASVEAGAVLADICAGLKQASTQHTEWKMRYSQAQAEQLTALTGFNLSHFIHSEPK
IGDSLCMLTHSHRFKGDAGIGLLASAVNRADLAGILSVWQSGLAELTWLEHSVDHSQTQA
KISEPSNNTGLKALLAQACEQYGDYLRLLQPTHATPIHTSEPFCPPSAMEAIAKFNQYRI
LCAMRTGDYGVEGINLAVTKALAQAKLIQPQQEFYLGRPIIIQSNDYNLGLFNGDIGLIL
QDEERADRLMAHFIKADGKLLKVLPARLPSHETCYAMTVHKSQGSEFNRVALVLPPAPSL
VQWQLLTKELIYTAITRAKQHFSCLGTQQVFERASLQATQRASGLADRLWGDQSLSHTAA
VNS
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacagcaccgatacgaacagcgccgacatgaataacgccactgcccttgccgcc
aattggtacaatgcaggcgcgctgagacttaaagcaccactgactgagttgctcaaatat
tgggagaaagagcggcttatcaccgctctcgatcgccattttgccctcgagatggcccgt
cttcaccccaatgacgcccaagagccactgtttatgctgctgtgcgccctgttgagtcag
caactgtcggcccaacatacttgtctagtgctcgaatatatagtgccaaccaatccgatg
gcagagccgataaaccgctgtcaaatccgtttaagccttactgaactgattgacgcactg
caacactttgacgccattggagcaccaaatagcaataaaccactgatttttgaggatggt
agactctatcttgagcgttatcatcattttgaaacccaagttgccagcgccttaacaagg
ttatcagcggcggcgctttcgttaacgccatcgcagcctttagcatcggataatcaatca
cttttacagctacgcaggcaactggattgcttatttccaagcgcagcccacaccgttgaa
gcgaacatcgattggcaaaaggtcgccactgcaacggcgctcggtaacaagctggcggtg
ataacgggtggccccggtacaggtaaaaccactacggtgactaaattgctgttgttacaa
caattaggtacaccaaagcaaataagacttgtcgccccgacgggcaaagcggccgcccgt
ttaagtgaatccattaaggcttctaaagcgaggctcgagcaagagcttcaacaagcgagc
aaggaaaaccctcaagaaaaccaagtgttattaaccgcactgagtcgtatccccgaggag
gcatcaaccttacatcgcctgctgggtgtcattcccaattcagcgcattttcgccatcat
caaggtaacccattacggctcgatcttttgattgtggatgaagcctccatggtcgatttg
cctatgatgtacaagctgctcagcgcattgccggaacacgcaggcttgatattgcttggg
gatcaggatcaactcgcttcagttgaggcaggcgccgtacttgccgatatttgcgccgga
cttaagcaagcctcgactcaacataccgagtggaaaatgcgttatagccaagcacaggcc
gagcaattaaccgcgctcacgggctttaatttaagccactttatccacagtgagcctaaa
attggcgatagcctgtgtatgctaacccacagccatcgatttaaaggcgatgccgggatt
ggcttgctggccagcgcagtcaaccgcgccgatctcgcaggtattttatccgtttggcaa
agcgggcttgctgaattaacctggttagaacacagcgtagatcacagccaaacccaagca
aaaatcagtgaacctagcaacaataccggacttaaagcgctacttgcacaggcctgtgag
caatacggtgactatttacgcctgttacagccaacgcacgccactccaatacatacgagt
gagccattttgcccgccaagcgccatggaggcgattgccaaatttaatcaatatcgcatt
ttgtgcgccatgcgaaccggcgattatggtgtcgaagggattaatcttgcggtgactaag
gcattagcgcaggccaaacttattcagcctcagcaggagttttacctcgggcgccccatt
atcatccaaagtaacgactataacttaggcctgtttaacggcgatattggcttgattttg
caggatgaagagagagctgaccgcctgatggcccactttattaaagctgatggcaaactg
cttaaagtgttacccgcaaggctacctagccacgaaacctgttacgccatgacggtgcat
aaaagccaaggcagtgaatttaatcgagtcgccttagtgctcccgcctgcaccgagccta
gttcagtggcaattattaacaaaagagctgatctacaccgcaattacccgtgcaaaacaa
cactttagttgcctaggcactcagcaggtttttgaacgcgcaagcctgcaagctacccaa
cgcgcctcgggattagccgacaggctgtggggcgatcaatcgctgagccatacagcagca
gtcaatagctaa
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