Shewanella oneidensis: SO_2380
Help
Entry
SO_2380 CDS
T00099
Name
(GenBank) ATP-dependent DNA helicase RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
son
Shewanella oneidensis
Pathway
son03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
son00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SO_2380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
son03019
]
SO_2380
03400 DNA repair and recombination proteins [BR:
son03400
]
SO_2380
Enzymes [BR:
son01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SO_2380
Messenger RNA biogenesis [BR:
son03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SO_2380
DNA repair and recombination proteins [BR:
son03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SO_2380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SWI2_SNF2
Thioredoxin_8
TniB
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AAN55414
UniProt:
Q8EEK1
LinkDB
All DBs
Position
complement(2482462..2484426)
Genome browser
AA seq
654 aa
AA seq
DB search
MSYSASQPDEGSALISRLQQQFGFSEFRPGQGEVITQLLAGQSSLAIFPTGSGKSLCYQF
TALQLPHLTLVVSPLLALIKDQLNFLQQKGIKAASIDSTLTPEQTQQVMREARSGQLKLL
MVSVERFKNERFRQFIQSIPLSMLVVDEAHCISEWGHNFRPDYLKLPDYCRELSIPLVLL
LTATATRKVKQDMAIRFDIKPQHIVQTGFYRSNLDLTVLPVASENKLRILKQQLQSFDGA
GIVYVTLQHTAEEVASQLCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVVATIAFGM
GIDKSNIRFVIHYDLPKSIENYCQEIGRAGRDGQLSHCVTLANLDGINTVENFVYGDTPE
LASIATVIDSISQETQANYWEVQLNQLANQSNIRLLPLKTLLVQLELQGVIKPLYAYYAD
VQYRFLQPQAHVLSQFSPERQAFLTQIFTHTQMKRVWGSLDFNALYQATGAERNRVLAAL
EYLASQQLIELETKQITDVYQVETVKLSTPTLAKDLYHYFADKEAKEVARIAQLVRFFEL
TTCLNYNLARYFDDNAAPKSCGHCSVCRGQVAKLTYSNTPIWPEDQRICADLNELNQLVR
SKGMVPLSLETQCRFLAGMSLPIFTRLQVRKLAGFGRCENLRYAEIKQRLQHLI
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcttattcagcgtctcagcctgacgaaggctcagctttaatctcacgattacagcaa
caatttggtttttcagaatttagaccgggccaaggtgaggttatcactcagctattagcg
ggccaatcgagcctggcgatatttccaacgggctcaggaaaatcactctgttaccaattt
accgcgcttcagcttccccatttaaccttagtggtttcacctttgttggccttgattaaa
gatcaattgaatttcttgcaacagaagggcattaaagcggcaagtatcgactcaacttta
acgccagaacagacccaacaggtcatgcgagaggcgcgttcaggccagttaaaattgttg
atggtgtcagttgaacgcttcaaaaatgaacgttttcggcagtttattcaatctattcca
ctatcaatgctggttgtggatgaagcccactgtatctccgaatgggggcataattttcgt
cccgattatttgaaattacccgattattgccgtgagttatcgattccgttagtgctgtta
ctcaccgctaccgcaacgcgaaaagtcaaacaggatatggcgattcgtttcgatataaag
ccacaacacattgtgcaaacaggtttttatcggtcaaatcttgatttaacagtgctacct
gttgccagtgaaaataaattacgaatactcaagcaacaactacaaagttttgatggtgcg
gggattgtctatgtgacgttgcagcatacagcggaagaagttgcatcacaactttgcagc
atgggctttgttgctcaggcttaccatgcggggtttgatgatgataaacgtcagcaaatt
cagcatgattttatgctaggtcagactcaaatcgtcgttgcaaccatcgcctttggcatg
gggattgataaaagcaatatccgttttgtgatccactatgacttacctaaatccatcgaa
aactactgccaagaaattggtcgcgcagggcgtgatgggcaactttcccattgcgttacc
ttagctaatttggatggtatcaacactgtagaaaactttgtgtatggcgacacaccggag
ctagcaagtattgccaccgtgattgacagcattagccaagaaacccaagctaattattgg
gaagtgcaactgaatcagttagccaatcagagtaatattagattgctgccacttaagact
cttctggtacagcttgaacttcagggcgtgatcaaaccgctttatgcctactacgctgat
gttcaatatcgatttctccaacctcaagcgcacgtattaagtcagttttcacctgagcgt
caggcatttttaacccaaatatttacgcacacccaaatgaaacgtgtttggggaagttta
gattttaatgcgctttatcaggccacgggagctgaacgcaaccgcgtgttggcggcctta
gaataccttgcaagtcagcaactcattgaattagaaaccaagcaaattaccgatgtatat
caggtggaaaccgtcaaattgtctacgcccacgttagcaaaagatctctatcactatttt
gccgataaggaagccaaagaagtggctaggattgcccaattagtgcgattctttgagcta
acaacttgcttaaattacaatttagcgcgctattttgacgataatgcagcacctaaatcc
tgcggtcattgcagtgtttgtcgcggtcaagtggccaaactcacgtattccaatacgcca
atttggccagaggatcagcgtatttgtgccgatcttaacgaacttaaccaactcgttaga
agtaaaggtatggtgccactttcccttgaaacccaatgccgctttttagcgggaatgagt
ctgccgatcttcacccgtttacaagtgcgtaaacttgcaggttttggtcgctgcgaaaat
ttaaggtatgccgaaataaaacaaagattacaacatttgatttaa
DBGET
integrated database retrieval system
