Shewanella oneidensis: SO_2580
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Entry
SO_2580 CDS
T00099
Symbol
rnd
Name
(GenBank) ribonuclease D Rnd
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
son
Shewanella oneidensis
Brite
KEGG Orthology (KO) [BR:
son00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
son03016
]
SO_2580 (rnd)
Enzymes [BR:
son01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SO_2580 (rnd)
Transfer RNA biogenesis [BR:
son03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SO_2580 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AAN55610
UniProt:
Q8EE10
LinkDB
All DBs
Position
complement(2706710..2707813)
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AA seq
367 aa
AA seq
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MFQYVSDEASLNALVAQYQQSPLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPIALP
DLSAFWALLDNPNIIKLVHSCSEDLEVFAHYGQRQPTPLFDSQIAASLCGMGHGLGYAKL
VETCLGEVIDKGESRTDWMRRPLTDAQLSYAANDVLYLYQLYPQLAEKLQTQDRLDWLYE
EGERMTEGRLASPDAETAYLKVKNAFQLTEHQLAYLKVLAKWRLEKALARDLALGFVIKD
HGLIALAKKQPKSMSDLLKLNDLTEQEKRIHGKDILRVMQTADLSNPPELVDVLALKPGY
KSAFKTIKTSLTELCEQHAILMEMLGSKRHIHEYLQWRWDKQQGELPTVLSGWRGEIAAE
SLAKLEV
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
gtgtttcagtatgtgagtgacgaagcgagcctcaatgccctcgtcgctcaatatcaacaa
agtccgctacttgtgttagataccgagtttgtgcgcactcgtacttattacgctaagctt
ggcctcattcaagcttatgatggtaaaaccttagccttgattgaccctattgctttgccc
gatctcagtgcattttgggctttgctggataatccgaatattatcaaactggtgcattcc
tgtagtgaggatttagaagtgtttgcccactatggccagcgccaacctactcccttattt
gatagccaaatcgccgcttcgctatgtggtatgggtcatggcttaggttatgccaagtta
gttgaaacttgcttaggtgaagtgattgataagggcgagtcgcgtaccgactggatgcgc
cgccctttgaccgatgcccagctcagttatgcggcaaatgatgtgttatacctgtaccaa
ctttatccgcaattagctgaaaagcttcaaactcaggaccgcttagactggctctatgaa
gaaggcgagcggatgaccgaagggcgtttagcctcgcctgatgccgaaactgcatacctt
aaggtgaaaaatgcctttcagctcaccgagcatcaattggcttaccttaaagtgttagcc
aaatggcgcttagaaaaagccttagcgcgggatttagccttaggctttgtgattaaagat
catggtttgattgcgctagcgaaaaaacaacctaagagcatgagtgatttgctcaaactg
aacgatttgaccgagcaggaaaagcgcatccacggtaaagatattttacgggtaatgcag
actgccgacttaagtaatccaccagagttagttgatgtattggcgcttaaacccggttat
aaatcagcctttaagaccattaaaaccagtttaacagaactctgtgagcaacatgccatt
ctgatggaaatgttaggttcaaagcgtcatattcatgagtatttacaatggcgttgggat
aaacagcaaggggaattgccgacagtattaagcggttggcgcggggagattgcggccgag
tcattggcaaaacttgaggtctaa
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