Shewanella oneidensis: SO_2744
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Entry
SO_2744 CDS
T00099
Name
(GenBank) helicase
KO
K19789
DNA repair protein RadD
Organism
son
Shewanella oneidensis
Brite
KEGG Orthology (KO) [BR:
son00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
son03400
]
SO_2744
DNA repair and recombination proteins [BR:
son03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
SO_2744
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_30
DUF7577
T1R_D3-like
AAA
Helicase_C_2
AAA_16
AAA_22
Zn_ribbon_3
zf-tcix
SLFN-g3_helicase
Cas3-like_C_2
DUF2987
DZR
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AAN55772
UniProt:
Q8EDK2
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All DBs
Position
2864069..2865841
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AA seq
590 aa
AA seq
DB search
MSVNSSPSVILRDYQQQAVDAAIVHFKKSTDSAVLVLPTGAGKSIVIAELARIARGRVLV
LTHVKELVAQNAQKVGLLTTEASIYSAGLNKKSSVGKTVVASIQSAARALGQFNEPFSLV
IIDECHRVSLEKTSQYQQLLSHLQQRNPQLKLLGLTATPYRLGTGWIYKRHYHGKVGSPE
LGIFEQCIFELPIRPLIKQGYLTAPTLFDGLSAQYDFSQIKANKNGEYPEAQVNDLLNHA
GRATTAIVKQLIELSHHRQGIIIFAATVRHAEEIVSQLNKEHREQTAIVTAQTPDNERDE
LIERFKARELKFLVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMIGRGLRICEGKKDC
LVIDYAANGYDLYFPEVGQAKPNSKSVPVQVHCPVCQFANIFWGLTDDDGDIIEHFGRRC
QGIVEHHGKKQQCDFRFRAKSCPDCGQENDIAARICQHCQSTLIDPDKRLKQVLNKQHHH
LFRCQHMTLMDDAGDLKVQYLDIDGNEFNRHFKLQTPAQWRALYALFIFPHSRTPGLKPK
QYKQVSELIADSATFKMPDLLLLKKHKKGWDLLESYFDYQGRYQTENKHI
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagttaattctagcccaagcgttatcctcagggactatcagcaacaagccgttgat
gccgccatcgtacactttaaaaaaagcaccgattccgccgtgttagtcctgcctactggg
gcggggaaaagtatcgtcatcgccgaactggctcgtattgcaagaggacgagtgctcgtc
ttaacccatgtgaaagaattggtggcgcaaaacgcacaaaaggtaggattactgaccact
gaggccagtatttattccgcagggcttaataaaaaatcaagtgtcggcaaaaccgttgtc
gccagtatccaatctgccgctcgcgccttaggccaattcaatgagcccttctcgctagtg
attatcgatgaatgccacagggtcagcctcgaaaaaaccagtcaatatcagcagctatta
agccacttgcagcaacgtaatccccaattgaaattattaggccttactgccactccctat
cggctcggcacaggctggatttacaaacgccactaccatggtaaagtcggctcccccgag
cttggaatattcgaacaatgtatttttgagcttcccattaggccgctaattaaacaaggc
tacttaaccgcgccaaccttatttgacggcttaagtgcccaatatgactttagccaaata
aaagccaataagaatggtgaataccctgaagcccaagtcaatgatttactgaaccacgca
ggacgcgcaaccacggccattgttaaacaactgattgagctaagtcatcatcgccaaggg
atcattatttttgcggcaacggtgcgccatgcagaagaaatcgtcagtcaacttaataag
gagcaccgcgagcaaactgcgatagtcaccgcacaaaccccagataatgaacgtgatgag
cttatcgaacgatttaaggcaagagagcttaagttcctcgtcaacgtagcggtattaacc
acagggttcgatgcgccccatgtggatttgattgcaattttacgccccaccgcatcggtg
agcttgtttcagcaaatgattggccgtggtcttaggatttgcgagggcaaaaaagattgc
ttagtgattgattacgcggctaatggctatgatttgtattttccagaagtcggtcaagcc
aaaccaaatagcaaatcggttccggtacaagtacactgccctgtctgccaatttgccaat
attttttggggattgacggacgatgacggcgatattatcgagcactttggccgtcgttgt
cagggtatagttgagcatcacgggaaaaaacagcaatgtgattttcgatttcgcgctaaa
tcctgccctgattgcggacaagaaaatgacattgccgcacgcatttgccagcattgccaa
tcaaccttaatcgaccccgataaacgccttaagcaagtgctgaataagcagcaccatcat
ctatttcgttgccaacacatgaccttaatggacgatgcgggcgatcttaaggtgcaatat
ctagacattgacggaaatgagtttaatcggcactttaagctgcaaacgcccgcccaatgg
cgtgccttatatgcgctgtttatttttccccatagtcgcacaccgggccttaaacctaag
caatacaaacaagtatcagagctgattgccgatagcgccacctttaaaatgccggatctc
ttactgctgaaaaagcacaaaaaaggctgggatttgctcgaaagctatttcgattaccaa
gggcgctatcaaactgaaaataaacacatctga
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