Shewanella oneidensis: SO_2843
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Entry
SO_2843 CDS
T00099
Symbol
sbcC
Name
(GenBank) dsDNA exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
son
Shewanella oneidensis
Brite
KEGG Orthology (KO) [BR:
son00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
son03400
]
SO_2843 (sbcC)
DNA repair and recombination proteins [BR:
son03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SO_2843 (sbcC)
Archaeal homologous recombinant proteins
SO_2843 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
Motif
Other DBs
NCBI-ProteinID:
AAN55859
UniProt:
Q8EDB9
LinkDB
All DBs
Position
complement(2960663..2963719)
Genome browser
AA seq
1018 aa
AA seq
DB search
MKPLQLSMSAFGPFASTQTIDFTELGDNPLFLINGPTGAGKTTLLDGISFALYGKTTGNE
REGSQMRCDMADDNLLTEVTFSFKLGNTAYRIRRVPEQDRLKKNGEGSTVQKSEAQLFKI
APDGTETLLVASKVSEATAEIEALTGLDVEQFRQVMVLPQGKFRELLMADSKAREQIFSQ
LFQTHIYKRIEDILKAKAADIRALVKEQRARRDGILQTAELASDDELAAEFSRIEPELAA
AIVAKERSTAAHLQALKQHDSAQQRFAEFTRLSELESQATLLHEQQADIAAQTARLNVAK
QAQRLKPLLDNALSREQEATIANDQRSRAQMVLDAAKLALAKAETEAQELNGLEPRLRTQ
EQLANSLTSLAPQLAEFADVEQALAKANILLQQTKVQGQETKTALASLVEQRSTYENQLP
ALQQQSERQLATAQALQQQRHLLELFKQWQQICVKVAQTEEALVLAGLQGKTLNAQHQAA
LSDYKSLQLSWFQGQAAILARELKLEEPCPVCGSIEHPHPATSHDNLPTDAQLQAAQNAE
VNALEQLSKARAEYRGLQKQLEAQQLQANELASSLGDAVELPLESHIQQLEELTRHAKQA
EVATQALQQLQQQIKALQQQELGLTQQLELERERYHQQEGEVARLSGQLAEKALRIPDEY
RSLTALNQAINDNQQQLEKTRGLIHALRTAQQQASEHCVAAQTALEAAIQRCHSADELQA
LALGDLNSQLHLAGFTDRDALGAALLADEQMQALGERIETYQRQCALNQSQLAQLKTQLS
DVSVPDLDALEAMLAEKRQQLNIAEVAWSQLNTRFSLLKQTQTQLSIVDQKAKALEDEYA
IIGTLADVANGNTGNKISLQRFVLSVLLDDVLLAATQRLHLMSKGRYRLLRKEDRAKGNK
ASGLELEVEDAYTAKVRPVATLSGGESFMAALSMALGLSDVVQAYAGGIKLDTLFIDEGF
GSLDQDSLELAIRTLMDLQSAGRMIGVISHVSEMKEQINTRIDLLKTSHGSEIKVILP
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgaagccactacaactttccatgtcggcttttggcccgtttgcttcgactcagacaatt
gattttactgaacttggtgataatccgttatttttgatcaacgggccaactggcgcgggt
aaaacgactctgctcgatggtatcagctttgcgttgtatggaaaaaccaccggcaatgaa
cgtgaaggcagccaaatgcgttgcgatatggccgatgacaatctgcttactgaggtgacc
tttagttttaaattgggtaacaccgcgtatcgtattcgccgagtgcccgagcaggacaga
ctcaaaaagaatggcgagggttcgacagtccaaaagagcgaggcgcagctgtttaagatc
gctcccgatggtactgaaaccctattagtcgctagtaaagtatcagaggcaacggctgaa
attgaagcgttaacgggcttagacgtagaacaatttcgtcaggttatggtgctgccgcag
gggaagtttcgtgaattactcatggctgactccaaggcgcgtgagcaaatttttagtcaa
ttatttcaaacccatatctataaacgtattgaagatatcttaaaggcgaaggcggccgac
atccgcgccttggtaaaagagcagcgtgcgcgtcgcgatggcattttacaaaccgctgag
ctagcgagtgacgacgaacttgccgccgagtttagtcgaatagaacccgaattggcggct
gctatagtcgcgaaagaacgtagcacggcggcgcatctacaggcgttaaaacagcatgac
agtgcgcagcaacgttttgctgaatttacccgtttaagtgaattggaatcccaagccact
ttgcttcatgaacagcaagctgatattgcagcgcaaacggctcgcctgaatgtggcaaag
caagcgcagcgtctaaagcccttattggataatgcgttatcgagggagcaggaagcgacg
attgctaatgatcagcgcagccgcgcccaaatggtactcgatgcggcaaagcttgcgctt
gccaaagctgaaaccgaagcgcaagagcttaacggcctagaaccgcgcttacgaactcag
gagcaactggctaacagcttaacgtcactagcaccgcaattggctgagtttgccgatgta
gagcaagcattggctaaggcaaacatcttattgcaacaaaccaaagtgcaggggcaagag
actaagacggcgcttgcaagcttagttgagcagcgcagcacctatgaaaatcaattgcca
gcattacaacagcaaagtgagcgtcaactcgcgactgcacaagccttgcagcaacagcgc
cacttacttgagttgttcaaacaatggcaacaaatctgcgtcaaagtcgcccaaactgaa
gaggcgcttgtactggcaggattacaaggaaagacgctgaacgcgcagcatcaggcagcg
ctaagtgactataagtctttacagctcagttggtttcaaggccaagcggccattttagcg
agggagctcaaactcgaagaaccctgcccagtttgcggcagtatcgagcatcctcatcct
gcaaccagtcatgataatttaccaacggacgcacagctacaagctgcgcagaatgccgag
gtcaatgcactcgaacaactcagcaaagcgagggcggagtatcgggggttacaaaaacag
ttagaagcacagcaattgcaggcaaatgaactggcctcctcgctgggagatgcggttgag
ctaccactcgaatcgcatatccaacagctcgaggaattaacacgccacgcaaaacaagcg
gaagtggccacccaagcattgcagcagttacagcagcaaatcaaagcgttgcagcagcaa
gagttaggattgacgcaacaattagagcttgagcgtgagcggtatcatcaacaagaaggc
gaagtggcgcgtttatctggccaattagcggaaaaggcgcttcggatccctgacgaatac
cgctcgcttactgcgttaaatcaagcgattaatgataatcagcagcagcttgagaagact
cgtgggctaattcatgcccttagaaccgcacagcagcaggcatccgagcattgtgtggca
gcgcaaacggcgctagaggctgcgatacaacgctgtcatagcgcagatgagctgcaggct
ctggctttgggcgaccttaactcacaactgcatttagcgggttttactgatagggacgca
ttaggggctgcattgttagccgatgagcaaatgcaagcgctgggcgagcgtattgaaacc
tatcagcgtcagtgcgccctaaatcagtcacagcttgctcagctaaaaactcagcttagt
gatgtcagcgtgcccgatctcgatgccctagaagctatgctcgcagaaaagcgtcaacaa
cttaacatcgcggaagtggcatggagccaactcaatactcggttctctttgcttaaacaa
actcaaacacagctcagtatcgtcgatcaaaaagcgaaagcccttgaggatgaatacgcc
attattggcaccttggccgatgtggccaatgggaataccggcaacaagatttccctgcaa
cgttttgtattaagtgtcttactcgatgatgtattactcgccgcgacgcagagattacac
ctgatgagtaaaggtcgatatcgattactacgcaaagaagacagagcaaagggaaataag
gcatcagggcttgaacttgaagtcgaagacgcttacaccgcaaaagtgcgccctgtggcg
accttaagtggaggggagagttttatggcagccttatccatggcactgggtttatcagac
gtggtgcaagcttacgcggggggcataaaactcgatacgttatttatcgacgaaggtttt
ggcagcctagatcaggactccctcgagctggcaattcgcaccttaatggatttgcaatcc
gcaggaaggatgatcggcgtgatatctcatgtttctgagatgaaagagcagataaatacc
cgaattgatctcttgaaaacttcccatgggagtgaaatcaaagtgattttgccttag
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