Shewanella oneidensis: SO_3125
Help
Entry
SO_3125 CDS
T00099
Name
(GenBank) ATP-dependent RNA helicase DEAD box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
son
Shewanella oneidensis
Pathway
son03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
son00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SO_3125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
son03019
]
SO_3125
Enzymes [BR:
son01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SO_3125
Messenger RNA biogenesis [BR:
son03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SO_3125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
ElaD-SseL-like_C
Cas3-like_C_2
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AAN56130
UniProt:
Q8ECL2
LinkDB
All DBs
Position
complement(3252406..3253689)
Genome browser
AA seq
427 aa
AA seq
DB search
MTQASSSVASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKT
AAFALPLLQRLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAF
GGVSVNLQMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEEL
EQVLAALPRQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQESTIEQRVITVNREQK
TALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFK
NGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHE
EYHHFGVIEKKNKIKLVREQIPGFEANAEIPLEVLAQEKPQAKPEGTGKKKRKQLPAANV
EFWGKKS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagcttcttcctccgtcgccagctttgccgaacttggcattattgcaccgcta
ggtaatcgactaaccgagctcggttatgtttcacccacccctgtacaagcggccacgatt
ccagccgtgctgagtgggcgggacgtattagcgggggcaaataccggctcaggaaaaacc
gccgcttttgcactgcccttattgcagcgtttgagtgaagcaaaaagtgctgataagtcg
gccggtgttgtacgttgtttggtgctcgtgcctacgcgcgaattggcacagcaagttgcc
gatagctttttatcctatgcatcccacttcaatggccaacttaagattgtcgccgctttt
ggtggtgtgtctgtcaatctgcaaatgcaaagcctacgcgctggcgcggatgttctggtt
gcaacgcctgggcgtttactggatttattagcaagcaacgcgcttaagttaactcaagtg
tctgcattcgtcctcgatgaagcggatcgcatgttaagccttggctttaccgaagagtta
gaacaagtgcttgcagcgttaccgcgtcaaaagcaaaccctattgttttcggcgaccttc
cccgaagaagtgcgtgcactgacaaccaaattactccatcaaccgcttgaatatcatctg
caaagtgagcaagaaagtaccattgagcagcgtgtgataaccgtgaaccgtgaacaaaaa
acggcgttgttggcccacttgattaaacagcatcaatggtcacaggcattgatttttgtc
agtgctaaaaatacctgtaatcatcttgcacaaaagctctcaaaacgtgggattagcgct
gaagtattccatggcgataaagcccaaggtgcacgaactcgcgtgctcgatggttttaaa
aatggtgaaattagtgtgctgattgcgaccgatatcgcagctcgtggtattgatattgat
aaactccccgtcgtgattaactttgatttgccaagaagcccggcagattatatgcaccgt
attggtcgtagtggccgtgcgggggaggcgggtcttgcggtgaccttaatttcccatgag
gaatatcatcactttggcgtgattgaaaagaaaaacaaaatcaaacttgtacgtgaacaa
atccccggatttgaagccaatgccgaaataccgcttgaagtgttagcgcaggaaaaacct
caggccaagcctgaaggcactggcaagaaaaaacgtaagcagttacccgcagcgaatgtt
gaattttggggtaaaaagtcttaa
DBGET
integrated database retrieval system
