Shewanella oneidensis: SO_3127
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Entry
SO_3127 CDS
T00099
Name
(GenBank) multifunctional transcriptional regulator of DNA repair AraC family/DNA glycosylase / 8-oxoguanine DNA glycosylase
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
son
Shewanella oneidensis
Pathway
son03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
son00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SO_3127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
son03000
]
SO_3127
03400 DNA repair and recombination proteins [BR:
son03400
]
SO_3127
Enzymes [BR:
son01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
SO_3127
Transcription factors [BR:
son03000
]
Prokaryotic type
Helix-turn-helix
AraC family
SO_3127
DNA repair and recombination proteins [BR:
son03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SO_3127
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HTH_3
HhH-GPD
DUF6233
HHH
Motif
Other DBs
NCBI-ProteinID:
AAN56132
UniProt:
Q8ECL0
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All DBs
Position
complement(3254336..3255964)
Genome browser
AA seq
542 aa
AA seq
DB search
MKQISVSLNSAAKPPHEQVSAALEDCHLSASVCREARTSRDPRFDGKFFVGVLTTGIYCR
TVCPAVAPKEENVRYFDSAIKAAQAGLRPCLRCRPDSAPGSNPWKGTGTTLDRAIGLIEA
GALSGEHGLTVEALADKLGISSRYLNKLFTSGFGTSPKQYALYRQLLFAKQLLHQTQLPI
TQIALAAGFNSIRRFNEAFQQALQLTPTQLRKSSQKSAAKIDEGEGSDTACPQAMPAHSL
SLYQYYRPPLDWQAQLAFYRLRAVAGMEWFSNTDNDCLEKIAQDKQALEYGRTLQIDDIR
AVVHIIHEAHLHRFKLTLTFTPDSPIAGLQKLITQVRRILDLDADMQQIEHNLQRLTDLK
LIPKSGLRIPGAGSLFEAGCRAILGQQVTVVQATKLLNLLVDAYGERFSLNGREYRLFPI
PQAIRGASLDELKMPGARKLALNALAAFICERPNASVDDWLEVKGIGPWTIAYAKLRGLG
EPNIFLHTDLIVKKQLLVSVAEQNGLDAQALKQLDYLTLCQRISADIAPWGSYLTFQLWS
NA
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaatatccgtgagcctaaattcagccgctaaaccgccacacgagcaagtatca
gcagcattagaggattgtcatttatccgcgagcgtttgccgcgaagcccgtaccagccgt
gatccacgctttgacggtaagttttttgtcggcgttctcactacaggaatttattgccga
accgtatgtcccgccgttgcacctaaagaagaaaacgtgcgttatttcgattcagctatc
aaagccgcacaggcgggactgcgaccttgtcttcgttgccggccagatagtgcgccgggc
tctaatccatggaaaggcactggcactaccttagatagggctattggtttgattgaagcg
ggcgccttatctggcgagcacggattaacggtcgaggcgttggcggacaaactaggtatc
agtagccgctatttaaataagttgtttacttctggatttggcacttcacccaagcaatat
gcgctctatcgacaactgttatttgccaaacaattattgcatcaaactcaattaccgatc
acgcaaatagcgcttgctgccggattcaatagtattcgtcgtttcaatgaagcttttcag
caggcgctgcaattaacgcctacacagttaagaaaatccagccagaagtcggcagcaaag
atagacgaaggggagggttccgataccgcttgtccgcaggcgatgccggcccatagttta
agtttgtatcagtattatcgtccgccgctcgattggcaggcgcagctggccttttatcgc
ctgcgcgctgttgctggaatggaatggtttagcaatacagataatgactgcctcgaaaag
atagcacaggataaacaagcgcttgagtatggccgcaccctgcagatcgacgatatacgt
gcggtggtgcatatcatccatgaggcgcatttacatcgctttaaactcacgctgacattc
acgccagactcgcccatagcgggcctacaaaaactcattacccaagtgcggcgcatttta
gatctcgatgccgatatgcagcagattgagcataacttacagcgtttgaccgatcttaag
ctaatccctaaatcagggcttaggatccctggcgccggctctttgttcgaggcgggctgc
cgagccattttaggacagcaggtgactgtggtgcaggccactaagttactcaatttattg
gtcgacgcctatggtgaacgctttagtttaaatgggcgagaatatcgcttgtttcccata
ccgcaggcgattcgcggtgctagtttggatgaattgaaaatgcccggcgcgcgcaagctg
gcgctcaatgcgctcgcggcgtttatctgtgagcgccctaatgcgagtgttgatgattgg
cttgaggtcaaaggtatcggcccttggacgattgcctatgcaaaattacgtgggcttggc
gagccgaatattttccttcacactgatcttattgtgaaaaaacaattactggtgagtgtg
gctgagcagaatggattggatgcacaagcgttgaaacaactcgattatctaacgctttgt
caacgtattagcgcggatattgctccttgggggagttatttgaccttccaactctggtcg
aatgcgtaa
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