Shewanella oneidensis: SO_3188
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Entry
SO_3188 CDS
T00099
Symbol
rfbB
Name
(GenBank) dTDP-glucose-4,6-dehydratase RfbB
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
son
Shewanella oneidensis
Pathway
son00521
Streptomycin biosynthesis
son00523
Polyketide sugar unit biosynthesis
son00525
Acarbose and validamycin biosynthesis
son00541
Biosynthesis of various nucleotide sugars
son01100
Metabolic pathways
son01110
Biosynthesis of secondary metabolites
son01250
Biosynthesis of nucleotide sugars
Module
son_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
son00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
SO_3188 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
SO_3188 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
SO_3188 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
SO_3188 (rfbB)
00525 Acarbose and validamycin biosynthesis
SO_3188 (rfbB)
Enzymes [BR:
son01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
SO_3188 (rfbB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
Polysacc_synt_2
RmlD_sub_bind
3Beta_HSD
NAD_binding_4
adh_short
KR
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
AAN56188
UniProt:
Q8ECF4
LinkDB
All DBs
Position
complement(3325917..3327044)
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AA seq
375 aa
AA seq
DB search
MKILVTGGAGFIGSAVVRHIIGNTQDCVVNVDKLTYAGNLESLTSVADSPRYTFEKVDIC
DRTELERVFSLHQPDAVMHLAAESHVDRSITGSADFIQTNIVGTYTLLEAARHYWMQLNT
ERKSAFRFHHISTDEVYGDLPHPDEINVECSMLNDECKDHSTLNIQHSTLPLFTETTPYT
PSSPYSASKASSDHLVRAWLRTYGFPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLP
IYGKGDQIRDWLYVEDHARALFKVVTEGKVGETYNIGGHNEKRNLEVVQTICSILDSLVP
KNTPYAEQIAYVADRPGHDRRYAIDATKMSAELDWQPQETFETGLRKTVEWYLANQEWCQ
HVQDGTYQRERLGEL
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattttagtaactggtggggcgggctttattggttctgcagtcgtacgccatatc
attgggaatacccaagactgcgtggttaacgtagacaaacttacctacgccggcaactta
gaatcacttactagcgttgctgatagtccgcgctacacattcgaaaaagtagatatttgt
gatcgtactgagcttgaacgagtgttttcactgcatcaaccggatgctgttatgcacctt
gctgcagagtctcatgttgatcgctcaattaccggctcagcagattttattcaaacgaat
attgtgggtacttacacgctacttgaagctgcacgccattactggatgcaacttaatact
gagcgtaaatcagctttccgtttccaccatatatctacagatgaagtgtatggtgattta
ccacacccagatgaaatcaatgttgaatgctcaatgttgaatgatgaatgtaaagaccac
tcaacacttaacattcaacactcaacattgcctctttttactgagaccacaccttatacg
cctagcagtccctattcagcctctaaagcttcaagcgaccacctagtacgcgcatggcta
cgtacctatggtttcccgacgattgtaaccaactgctccaataactatggtccttatcac
tttcctgaaaagttgattccattggttatcctgaatgcactcgaaggcaagccattacct
atttatggtaagggcgatcagattcgtgattggctatatgtcgaagaccatgctcgcgca
ctttttaaagttgttactgagggaaaagttggagaaacatataatattggtgggcataac
gaaaagcggaacttagaagtagtacaaactatttgcagcatcttagattcattagtgcct
aaaaacacgccttatgctgagcaaattgcctatgtcgcagatagacctggccatgatcgc
cgatatgccattgatgcaacaaaaatgagtgctgagcttgattggcagccacaagagact
tttgaaacgggtctacgtaaaaccgtcgaatggtatttagcaaaccaagaatggtgccag
catgttcaagatggaacttatcagcgtgagcgcttaggcgaactttag
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