Shewanella oneidensis: SO_3210
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Entry
SO_3210 CDS
T00099
Symbol
fliA
Name
(GenBank) RNA polymerase sigma-28 factor for flagellar operon FliA
KO
K02405
RNA polymerase sigma factor FliA
Organism
son
Shewanella oneidensis
Pathway
son02020
Two-component system
son02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
son00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SO_3210 (fliA)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SO_3210 (fliA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
son03021
]
SO_3210 (fliA)
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
son02035
]
SO_3210 (fliA)
Transcription machinery [BR:
son03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SO_3210 (fliA)
Bacterial motility proteins [BR:
son02035
]
Flagellar system
Flagellar assembly proteins
Stator
SO_3210 (fliA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
UPF0122
HTH_23
HTH_10
Motif
Other DBs
NCBI-ProteinID:
AAN56209
UniProt:
Q8ECD3
LinkDB
All DBs
Position
complement(3350161..3350874)
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AA seq
237 aa
AA seq
DB search
MNKAAAYTCLDNKTSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFD
GGKGAKFETFAGIRIRGAMLDEIRRGDWVPRSVHRNNRRIAQAIDELEQVLGRDARDTEI
AEKLDMTLDEYHHILNDVSVGKIIGIEDLGVSEDILTTSDNVSDGTFEVLAETQFHSALV
EAIKILPERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKGKLKQWT
NT seq
714 nt
NT seq
+upstream
nt +downstream
nt
gtgaataaagccgcagcgtatacttgtttagacaataaaacgtcaatcgttgaacagtat
gcaccgttggttaaaagaattgcacatcacttgcttgccagattacctgcctcagtgcag
ttagatgacctgctacaggctgggatgatgggattattagaagcatcatctaagtttgat
ggcggtaaaggtgcaaagtttgaaaccttcgccggcataaggatccgtggcgccatgttg
gatgaaatccgccgtggcgattgggttcctcgttctgttcaccgtaataatcgccgaatt
gcccaagctattgatgagttagagcaagtgctaggtcgtgatgcgcgcgacacagaaatt
gcagaaaaacttgatatgacgctcgatgagtaccatcatattcttaacgatgtttctgtt
ggtaaaatcatagggatagaagacttaggcgtatcagaggatatactcactacaagcgat
aatgttagcgatggtacgtttgaggtattggcagaaacccagtttcattctgcacttgtt
gaggcgataaaaatattgcccgaaagagatgcgctagtgctatcgttatactacgatgaa
gcattgaatttaaaagaaattggcgccattcttgaagtaagcgaatcgcgagttagccag
atattaagtcaggcaatgttgcgactcaaaggcaaactcaagcagtggacataa
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