Shewanella oneidensis: SO_3384
Help
Entry
SO_3384 CDS
T00099
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photolyase PhrB
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
son
Shewanella oneidensis
Brite
KEGG Orthology (KO) [BR:
son00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
son03400
]
SO_3384 (phrB)
Enzymes [BR:
son01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
SO_3384 (phrB)
DNA repair and recombination proteins [BR:
son03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
SO_3384 (phrB)
Prokaryotic type
SO_3384 (phrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
AAN56382
UniProt:
Q8EBW1
LinkDB
All DBs
Position
complement(3521998..3523536)
Genome browser
AA seq
512 aa
AA seq
DB search
MSVNQNRSGKHALMWFRQDLRLTDNQAFTAACDWVRQHHAAKLKAIYIATPSQWHQHDIA
PIQLDFIQRHVNLLAQGLVSLGVEFELIQLDSFRDIPAFLTSYCEEHSIGRVFAGQEPEI
NEQKRDQACVEAGIPLSLSDEHCLLPPGTVLNLSGDMYRVFTPFSRKWREVAAKQAILPL
GVPAPLGSILSEPKPLFFKNIGSTYLAASKDIASSKKGFNQTAPNPLISSEQWAAGEGQA
KRLLNQFIQQKVQDYKQDRDFPAIDGTSVISPYLAIGVLSPRQCVAALLQRFPEVIVDDT
SPGRTWLNELIWREFYRHLLVAFPDLSKGNNFNRQADHVLWRNNQSEFLAWCEGKTGYPI
VDAAMRQLNQTGWMHNRLRMVVASFLTKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWS
AGCGCDAQPYFRIFNPMSQSEKFDPDGRFIRKYLPELASWGVTRLHQPNQQKMPSLFEAP
LFASQADYPNAIVEHNAARARALTVLGVLKKA
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttaatcaaaacaggtcggggaaacatgcattaatgtggtttcggcaagatctg
cgccttaccgataatcaagcgtttacggccgcctgtgattgggtaaggcaacatcatgcc
gccaagcttaaagcgatttacatcgccaccccaagtcaatggcatcagcatgatatcgcg
ccaattcaactcgactttattcagcggcatgtgaatctactggcccaaggactggtgagc
ttaggggttgaatttgaactcattcaactcgatagctttagagatattcccgcattttta
acgagttattgtgaagagcatagtattggacgggtatttgcaggacaagaacctgagatc
aatgagcaaaagcgcgatcaagcttgtgttgaagcgggaattcctttgtcacttagtgat
gaacattgcttattaccaccgggaaccgtgcttaatttaagtggtgacatgtatcgggtg
ttcactccttttagtcgcaagtggcgagaggttgccgcaaaacaggccattttgccgcta
ggtgtgcccgcgccgctaggctctatcttgtctgagcctaagccattattttttaaaaat
atcgggtcgacttatttagctgcgagtaaggacattgcgtcatctaaaaaaggcttcaat
caaaccgcaccaaatccgcttatctcgagtgagcagtgggcggcaggtgaagggcaagcc
aagcggctgcttaatcaatttattcagcaaaaagtgcaagactataagcaagatagagat
ttccccgccattgatggcaccagtgttatctccccttatttggcgattggcgtactcagc
ccaaggcaatgtgtcgcggcgctattacaacgtttccctgaagtcattgttgatgacaca
agcccagggcgaacatggctaaatgagctgatttggcgggagttctaccgtcatttgctg
gtggcttttcctgatttatcaaagggaaacaactttaatcgccaagccgatcatgtgctg
tggcgtaataatcaaagtgagtttttagcttggtgtgagggcaaaacaggctatccgata
gtggatgcggccatgcggcaacttaatcaaacgggctggatgcataatcgtctgcgtatg
gtggtggcgagctttttaaccaaacacttgcttattgattggcgttggggggagcggtat
ttccgccagcatcttatcgacggcgatctggcggctaacaacggtggctggcagtggtca
gctggatgcggttgtgatgcgcagccgtactttcggatttttaatcctatgagccagagc
gaaaagtttgatccagatggccgctttattcgtaagtacttaccagaactcgcatcttgg
ggcgtgacgcgattgcaccaacccaatcagcaaaaaatgccttcgttgtttgaagcaccg
ttatttgcatcgcaagcggattatcccaatgcgattgttgagcacaatgcagcaagggca
agggcgctgacggtactaggtgtgctgaaaaaggcttag
DBGET
integrated database retrieval system
