Shewanella oneidensis: SO_3388
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Entry
SO_3388 CDS
T00099
Name
(GenBank) ATP-dependent RNA helicase DEAD box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
son
Shewanella oneidensis
Pathway
son03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
son00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SO_3388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
son03019
]
SO_3388
Enzymes [BR:
son01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SO_3388
Messenger RNA biogenesis [BR:
son03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SO_3388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
EAD10
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AAN56386
UniProt:
Q8EBV7
LinkDB
All DBs
Position
complement(3526449..3527678)
Genome browser
AA seq
409 aa
AA seq
DB search
MSFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL
QLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA
VFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ
RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTEFVSHLV
RSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLV
ATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEV
ETLLDKRLPQQWYPGFEPDFNKMLPEPRRNSKAAQKQRAKKRALGGKKR
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttagcgcgctttctttaaatacccaattagtggacaccttagctgaacttggc
tatcagcagccaacgcctattcaagtcgaggctattcccgcgatcttaacaaaacaagat
gtcatggcgggggctcaaacaggaacggggaaaaccgcagcctttgccttaccgattctg
cagttgttaatggctgataaccaaagcgatcacgcggcgaaagcaatccgcgccttagtt
ttagtgccgacgagggagttggcactacaagttcagcaaagctttgtaaaatatgcgaaa
ggaacagatattcgtgtagggattgcctatggcggagtcagtattgaagcgcagcaagcg
gtgtttaacgcagggattgatgtcttgattgcaacccctggccgcttgcttgatcatttg
cgtcaaggtgcacttaatcttaaccaattgaacacactggtatttgatgaagccgaccgt
atgcttgatatgggatttatggatgaaatccaagccgtgctaaaacaagtgccagcccag
agacaaaccctgctgttttccgccaccttggatgattcgatttttagttttagtaaaaat
ctcctgcgtgaccccaaacggattgaagtggctaaacctaatacgaccgcagcccagata
gagcagcgggtctatgccattgatagcgatcgtaaaactgaatttgtcagtcatttagtc
cgcagcaaaaactggcagcaagtgttgatatttagccgcactaaacaaggggtcgataag
ttaacagcccaacttaataagctaggggtggcgacgcagtccttccacggcgatttatcc
caaggtgcacgagaaaaagtattacaggaatttaaacaaggacttgtgcaagtcttagtt
gccaccgatgtggctgccagagggctcgatattgccgagctacagtatgtgattaatttc
gaattgccgtttattgctgaagattatattcaccgtatcggtcgaactggccgggccggt
agcgctggtttggcaattacgctttttagccaagaagatgcgctactgctagaagaggtc
gagacactgctcgataaacgtctgccacaacaatggtatcccggctttgaacctgatttt
aacaaaatgctccccgagccgagacgcaatagcaaagccgctcaaaaacaacgggctaaa
aaacgcgccttaggtggtaaaaagcgctaa
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