Shewanella oneidensis: SO_3456
Help
Entry
SO_3456 CDS
T00099
Symbol
rumA
Name
(GenBank) 23S rRNA (uracil1939-C5)-methyltransferase RumA
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
son
Shewanella oneidensis
Brite
KEGG Orthology (KO) [BR:
son00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
son03009
]
SO_3456 (rumA)
Enzymes [BR:
son01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
SO_3456 (rumA)
Ribosome biogenesis [BR:
son03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SO_3456 (rumA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
PCMT
Methyltransf_11
TRM5-TYW2_MTfase
MTS
Methyltransf_15
Methyltransf_23
Methyltransf_4
CMAS
UPF0020
Methyltr_RsmB-F
Methyltransf_12
RrnaAD
Cons_hypoth95
PrmA
Ubie_methyltran
N6_N4_Mtase
DREV
Motif
Other DBs
NCBI-ProteinID:
AAN56449
UniProt:
Q8EBQ3
LinkDB
All DBs
Position
complement(3600498..3601847)
Genome browser
AA seq
449 aa
AA seq
DB search
MAQFFKAKPNSSKQLSAKQSFSVQQLDHLGAGIAQHQGKVVFIPGALPNETVQAQLTEQK
KNYARAKLIKVETPSTERVSPLCPHYHTCGGCDLQHMSLTAQREHKSAALVDIMAKFAGA
EGSLAPALSGEGWHYRRRARLATLFDKNTKQLSLGFRASSSSHVVSITECLVLAKPLSDL
IAPFAKLLNQLAAKSSLGHLELIAADNGHFAVIRITKSLNDKDMAKLAQFAEQHQIHICL
QDNEGEFHGVNGTLLLPVYQLLDDKTDVQPVSLTFTPGNFVQVNAQINKAMVAQALDWLA
PQPGERILDLFCGMGNFSLPLARMGADVIGVEGVPEMVSQARENAVANGLSNLTFYHGDL
SADLSSEPWMGKIDKLLLDPARAGAYESLQWLKKMKPRQVVYVSCNPASLARDSAVLLER
GYKLQKLGLIDMFPQTHHIEAMALFELAK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggcacaattttttaaagcaaaaccaaatagttccaaacagttgtccgctaagcaatcc
ttcagcgtgcagcagctcgatcatctcggagcaggtatagcacaacatcagggaaaagtc
gtatttatccccggcgccttacccaatgaaaccgtgcaggcgcagttgaccgaacaaaag
aaaaactatgcccgagccaagttaattaaggtcgagacgccaagcactgagcgggtttcg
cccttatgtccccattaccacacttgcggtggctgtgatttacagcatatgtcattaacg
gcgcaacgtgagcataagtcggcggctctggtggatattatggcaaaatttgctggcgcc
gaaggttctttagcccctgcattaagcggcgaaggttggcattaccgtcgtcgtgcccgt
cttgcgactttatttgataaaaataccaagcagttaagcttaggttttcgtgcatcgagc
agtagccatgtggtgtcgattactgagtgtttagtcttggctaagcctttgtctgattta
atcgccccatttgctaagttgctgaatcaactcgcggcgaaatcaagtctaggtcactta
gagttgattgcagccgacaatggccattttgcggtgattcggatcactaaaagcttaaat
gataaggatatggcaaagcttgcgcagtttgccgagcagcaccaaatccatatttgtttg
caagataatgaaggcgagttccatggtgtgaatggcacgctgttattgcctgtttaccaa
ttgctcgatgataaaactgatgtacagccggtgagcttaacttttactccgggtaacttt
gtgcaagtcaacgcacaaattaacaaggcgatggtagcacaggcgttagactggttagcg
ccgcagccgggagagcgcattcttgacctcttctgtggtatgggtaacttcagtttgccc
ttagccagaatgggcgccgatgtgattggggttgaaggggtgcctgaaatggtcagccaa
gcccgtgaaaacgcggtggcaaatggcttaagcaatttaaccttttaccatggtgactta
agtgctgatttatcctctgagccttggatgggcaagattgataagttgctactcgatccc
gcgcgcgcaggcgcgtatgagagtttgcagtggcttaagaagatgaaaccacgccaagtg
gtgtatgtgtcctgtaatccggcgagtttagcccgtgacagtgcggtattactcgagcga
ggttacaagctacaaaaattaggcttaatcgatatgttcccacagacacaccatatcgaa
gcgatggcattgtttgagctggcaaaataa
DBGET
integrated database retrieval system
