Shewanella oneidensis: SO_3935
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Entry
SO_3935 CDS
T00099
Symbol
rnr
Name
(GenBank) 3'-5' exoribonuclease R Rnr
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
son
Shewanella oneidensis
Pathway
son03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
son00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SO_3935 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
son03019
]
SO_3935 (rnr)
03016 Transfer RNA biogenesis [BR:
son03016
]
SO_3935 (rnr)
Enzymes [BR:
son01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SO_3935 (rnr)
Messenger RNA biogenesis [BR:
son03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SO_3935 (rnr)
Transfer RNA biogenesis [BR:
son03016
]
Prokaryotic type
tRNA degradation factors
SO_3935 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
TFIIE_beta
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
AAN56910
UniProt:
Q8EAG7
LinkDB
All DBs
Position
complement(4079532..4081958)
Genome browser
AA seq
808 aa
AA seq
DB search
MIKDPHFEREQDKYENPIPSREYIIEYLRSQKSPITRDSIAAALQIHDEEQLEALRRRLR
AMERDGELVFTRGQSYGLPEKMDLISGTVLGHKEGYGFFKPDEGGDDLFISNRDMLMYFH
GDKVLAQKVGMDRKGRREARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILIAS
EDRNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSAA
IEKKLRRIPDEVTESDKVGRVDLRSLPLVTIDGEDARDFDDAVYAEVKPSGGWRLWVAIA
DVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTIS
ARGKLSGYKFYPAVMHSHARFTYTQVAAMLEGGPIAPEHEALFVHLQCLQSLYLALDEQR
AERGAIAFETIETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAKFVKKHKGEI
LYRVHESPSEQKLANFKEFLAERGLSMGGGLEPTPADYQNVMLQIADRPDAELIQVMLLR
SMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEKGEANEKWTPDG
GYHYQLDELDQLGEECSTTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTNFGLF
VRLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQVYQVGDPVTVKVAAVNLDDRQI
DLMMLGDSGKGGRRKAAPSRDKPMTARERVNREGAKMAKTAKSSGAKSKAGSGKAASKSK
SKAGTKPKKSVKDTAKKPKAAKRSTRKK
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgataaaagaccctcattttgagcgtgaacaggataagtacgaaaaccctatcccaagt
cgtgagtatattatcgagtacttacgttctcaaaaatcacctattacccgtgacagcatt
gctgctgcattacagatccatgatgaagagcagttagaagctctgcgtcgtcgtttacgg
gcgatggagcgcgatggtgaattggtgtttacccgcggtcaaagctacggcttacctgaa
aaaatggatctgatttctggcacagtgctgggtcataaagaaggctatggcttctttaaa
cctgacgaaggtggcgacgatttatttatctccaaccgtgatatgttgatgtatttccac
ggcgataaagtattggcgcagaaggtcggaatggaccgtaaaggtcgtcgtgaagcccgt
atcgtgcgacttattcagcctcgaagtgctgcgattgttggccgattccatgtcgatagc
ggcatggcatttgtgattgccgatgataaacgcattacccaagaaatcttaattgcaagc
gaagatcgcaatggcgcccgtcaaggcgatgtggtggtggtggaattaacccgccgtccc
ggtcgattcgttaaagccgcaggtaaagtgaccgaagtgctcggcaaacaaatggcgcct
ggaatggaaatcgaaattgccctgcgtaattacgatcttccccatacgtggtcggctgca
attgaaaagaaactgcgccgtattcccgatgaagtgactgagtctgataaagtcggtcgt
gtcgatctgcgcagtctgcctttagtgacgattgatggtgaagatgcccgcgactttgac
gatgcggtatatgccgaagtcaagcctagtggtggctggcgtctgtgggtggcgattgcg
gatgttagttactatgtacgcaccgattcagccttagataccgaagcacgcgcccgtggt
aactcggtgtacttcccgtcgcaagtgatcccaatgctgccggagaagatctctaacggc
ttgtgttcactcaatccccatgtagaccgcctctgtatggttgctgaaatgacgatttca
gcccgtggtaagctgtcgggttataaattttatccggcggtgatgcattcacacgcgcgt
tttacttacacccaagttgcagccatgctcgaaggcgggccgattgcgcctgaacatgaa
gcactctttgtgcatcttcaatgcttacagtcgctttatttagcgcttgatgaacagcgc
gccgagcgcggtgcgatagcatttgagacgatagaaacgcagtttatttttaacgaccag
cgcaagatcgataagattgtgccaagagctcgaaatcaagctcataaaatcattgaagaa
tgtatgattttggccaacgtatcggctgctaagtttgtgaaaaagcataagggtgaaatc
ctttatcgagtgcatgagtcgccctcagagcaaaaactggctaactttaaagagtttttg
gccgagcgcggcttaagcatgggcggtggacttgagccgacgccggcggattaccaaaat
gtgatgttgcagattgccgatcgccccgatgctgaactcattcaagtgatgttgctgcga
tcaatgcgccaagctatctacacgcctgataatgaaggccattttggtttagcactggaa
gaatacgcacattttacctcgccaattcgccgttatccggatttggtgcttcaccgtgtt
atccgctatttgttggcgaaggaaaagggcgaagccaatgaaaaatggactccagatggt
ggctaccactatcaactcgatgagttagaccaattaggcgaagaatgttctactactgag
cgccgcgccgacgaggctacccgtgatgtaagtgactggctgaaatgtgaatttatgcag
gaccatgtgggtgacacctttgaggccgtgattgcctctgtcactaactttggtttattc
gttcgcttaaatgacttatttatcgatggcttagtgcatatttctagccttggcagcgat
tattatcaatttgatcctatgcgtcagcgtttgattggcgagcataccggacaagtctat
caggtgggcgaccccgtcacggttaaagtggccgcggtaaacttggatgatagacagata
gacttaatgatgctcggcgatagtggcaaaggtggacgccgcaaggctgcgccgagtcgt
gataaacctatgacggcccgtgagcgtgttaatcgcgaaggtgcgaaaatggccaaaacg
gctaaatcgtctggggctaagtctaaagcgggttcaggaaaagcggcgagcaagtccaag
tcaaaagcgggcactaagcctaagaaaagcgtaaaagatacggcgaaaaagccaaaggcc
gcgaagcggagcacgagaaagaagtaa
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