Shewanella oneidensis: SO_3964
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Entry
SO_3964 CDS
T00099
Symbol
yhbJ
Name
(GenBank) GlmZ repressor YhbJ
KO
K06958
RNase adapter protein RapZ
Organism
son
Shewanella oneidensis
Brite
KEGG Orthology (KO) [BR:
son00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
son03019
]
SO_3964 (yhbJ)
Messenger RNA biogenesis [BR:
son03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SO_3964 (yhbJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PapZ_C
RapZ-like_N
AAA_16
AAA_22
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AAN56938
UniProt:
Q8EAE2
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All DBs
Position
4104347..4105201
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AA seq
284 aa
AA seq
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MKLVIVSGRSGSGKSVALRVLEDLGYYCVDNLPLPLIGSLLEQLKGSNDLVAISVDVRNL
PEQDKVLVKQLASLPEGTELTSFFLNSSDKVLLKRYSETRRLHPLSKSRVSLQEAIKLEG
KLLEPLSQQMDHYIDTSNLNIYELSDQVRQILLGSVDKELVINFESFGFKHGMPTEADFM
FDVRFLPNPHWEPELRPLTGLDEPVAEFLNRQPLVNKFIWQIENLLETWLPHLERNNRSY
LTIAIGCTGGQHRSVYVAEQLAKRFSNGKHKVNARHRELSHAKA
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgaaactggtcatagtgtcagggcgttcaggctcaggcaaatcggtcgcacttagagtg
cttgaagatctcggctactattgtgtcgataatttgcctttgccgttaatcggcagtttg
cttgaacagctcaaaggcagtaacgatctcgtcgccatcagtgtcgacgtgcgtaacctg
ccggagcaagacaaagtcctggtcaaacagcttgcaagcctacctgagggcactgagctc
actagcttttttctaaattccagcgataaagtcctgctcaagcgctatagcgaaacccgc
cgtttacatcccttgtctaagagtcgtgtttcactgcaagaagccattaaactcgaaggc
aagctgctagagccgctgtcacaacaaatggatcactacatagatacctccaatctaaat
atctatgaactcagtgaccaagtgcggcaaattctgcttggcagtgtcgataaggaacta
gtgatcaacttcgagtccttcggttttaagcatggtatgccgaccgaagctgactttatg
tttgatgtgcgctttttgccaaatccgcactgggagccagagctgcgaccacttaccggt
ttagatgaacccgttgccgagtttttaaatcgccagccactggtgaataagttcatctgg
caaattgagaatctactcgaaacctggttgccccatttagagcgcaataatcgtagctat
ctcacgattgcgattggttgcacgggtggccaacatcgctccgtttatgtcgccgagcaa
ctggcaaagcgttttagtaatggcaagcacaaagtcaatgcacgccatcgagagttgagc
catgccaaagcttga
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