Shewanella oneidensis: SO_4028
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Entry
SO_4028 CDS
T00099
Symbol
ssb
Name
(GenBank) single-strand binding protein Ssb
KO
K03111
single-strand DNA-binding protein
Organism
son
Shewanella oneidensis
Pathway
son03030
DNA replication
son03430
Mismatch repair
son03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
son00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SO_4028 (ssb)
03430 Mismatch repair
SO_4028 (ssb)
03440 Homologous recombination
SO_4028 (ssb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
son03032
]
SO_4028 (ssb)
03400 DNA repair and recombination proteins [BR:
son03400
]
SO_4028 (ssb)
03029 Mitochondrial biogenesis [BR:
son03029
]
SO_4028 (ssb)
DNA replication proteins [BR:
son03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
SO_4028 (ssb)
DNA repair and recombination proteins [BR:
son03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Other MMR factors
SO_4028 (ssb)
TLS (translesion DNA synthesis) factors
Other SOS response factors
SO_4028 (ssb)
Mitochondrial biogenesis [BR:
son03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial DNA replication factors
Other Mitochondrial DNA replication factors
SO_4028 (ssb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SSB
SSB_1
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AAN57002
UniProt:
Q8EA81
LinkDB
All DBs
Position
complement(4182430..4183146)
Genome browser
AA seq
238 aa
AA seq
DB search
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLF
GKLAEITGEYLRKGSQVYLEGKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGSRNQGGQ
GAPMGGMPQNGGYQSAPQQAAPAQNQYAPAPQAAPAYQAPAPQPQSGYNQPPAQQSYGQQ
QAQPHVQPHAQPQQGGYAPKPAAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atggccagtcgtggtgttaacaaggtaattttggttggcaatttgggacaagatccagaa
gtacgttacatgccaaacggtaacgcagtcgctaacattacagtggcgaccagcgaatcg
tggaaggaccaacaaggtcaacagcaagaacgtactgaatggcaccgtgtggttctgttt
ggaaaattagctgaaatcactggtgagtacctgcgtaaaggttcgcaggtttacctcgaa
ggtaaattgcaaacccgtaagtggaaagaccaaagtggccaagaccgttactcaacggaa
gtggtgattgatcaaagcggtagcatgcaaatgctaggtagccgcaaccaaggtggtcaa
ggtgccccaatgggggggatgccacaaaacggcggttaccaatcagccccacaacaagct
gctcctgcgcaaaaccaatacgcgccagcaccgcaagcggctccggcttatcaagcacca
gcgccacaacctcaatctggctacaatcagcctccagctcagcaaagctatggtcagcaa
caggcgcaaccccatgttcagcctcacgctcagccacagcagggcggttatgcacctaag
cctgcagctccggcgtatcaagcgccagcggctcctgcacagcgccctgcgccacagcca
cagcaaaactttactccagatttggatgacggttgggacgacgatatcccgttctag
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