Shewanella oneidensis: SO_4030
Help
Entry
SO_4030 CDS
T00099
Symbol
uvrA
Name
(GenBank) excinuclease ABC A subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
son
Shewanella oneidensis
Pathway
son03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
son00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SO_4030 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
son03400
]
SO_4030 (uvrA)
DNA repair and recombination proteins [BR:
son03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SO_4030 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SO_4030 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
AAA_23
AAA_25
RsgA_GTPase
DnaJ_CXXCXGXG
AAA_21
nSTAND3
NACHT
Viral_helicase1
T2SSE
Motif
Other DBs
NCBI-ProteinID:
AAN57004
UniProt:
Q8EA79
LinkDB
All DBs
Position
4185017..4187869
Genome browser
AA seq
950 aa
AA seq
DB search
MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC
PTHGQPLAAQTVSQMVDKVLEMPEDSRLMLLAPVVNGRKGEHVKLLEGLSAQGYIRARID
GEVCDLTDPPTLDLHVKHTIEVVVDRFKVRSDIQQRLAESFETALELSGGIAVVASMDEG
TTEELIFSANFACPHCGYSMAELEPRIFSFNNPAGACPTCDGLGVQQFFDPDRVITNPEL
SLAGGAIRGWDRRNFYYFQMLSSLADHYKFDVEAPFEQLSDKVRKIVLYGSGKDSIAFKY
INDRGDVVVRNHPFEGILNNMDRRYRETESNAVRDELAKFINTQACQSCGGSRLREEARH
VFIGDLNLPKLTVWSIGEALDYFDKLEFTGQKAQIAEKILKEVRDRLGFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRDLGNT
VIVVEHDEDAIRMADHIIDIGPGAGVHGGEVICDGPIEKIIACDESVTGQYISGKRNIHI
STPRTPFDPKQVIELYGARGNNLRNVDLTIPIGLFTCVTGVSGSGKSTLINDTFFKIAHK
MLNGATVDEPAPYDRIVGMEQCDKVVDIDQSPIGRTPRSNPATYTGIFTPIREIFAGTQE
SRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDACKGKRYNRETLEVRY
KGKNIHEVLQMTVEDAREFFDAVPAIARKLQTLMDVGLSYVRLGQSATTLSGGEAQRVKL
AKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSHGNTIVVIEHNLDVIKTADW
IIDLGPEGGGGGGTILATGTPEDVALHPTSHTARFLKPLLERDAQLTKQQ
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atggataagattgaaatacgcggtgcacgaacccacaatctcaaaaatatcaacctgact
atcccaagggataagttaatcgttatcacaggattatcgggatcaggcaaatcttcctta
gcatttgataccttatatgccgaaggccaacgacgttacgttgagtctctatctgcctac
gcccgccaattcttaagcttgatggaaaaacccgatgtcgatcatatcgaaggcttaagc
ccggcgatttccatcgaacaaaaatcgacgtcacataacccgcgctcaaccgtgggcaca
atcactgagatttacgactatctacgactactgtttgcccgtgtgggcgaaccccgctgc
cccacccacggccaacctttagcggctcaaaccgtgagtcagatggtggataaagtatta
gaaatgcccgaggatagccgcttaatgctgctagcccccgtggttaacggtcgtaagggt
gagcacgttaaattactcgagggcttatcggcgcagggttatatccgcgcccgtatcgac
ggtgaagtctgcgacttaaccgatccgccaaccctagatttacacgttaaacacaccatc
gaagtagtagtcgatcgctttaaagttcgcagcgatatccagcagcgccttgctgaatcc
tttgaaaccgcactcgaactctcgggtgggattgctgtggtcgctagtatggatgaaggg
acaacggaagaattaatcttctccgccaacttcgcctgtccgcactgcggctattcgatg
gccgagctcgagccacggattttctcctttaacaacccagccggtgcttgcccaacctgt
gatgggttaggggtacaacagtttttcgacccagacagagtgatcaccaatcctgagtta
tccctggctggcggcgcgattcgcggctgggatagacgtaacttctattacttccagatg
ttaagttcgctcgccgaccactataagttcgatgtcgaagcccccttcgaacagctatcg
gataaagtgagaaaaatcgtcctctacggttcaggtaaagacagcatcgccttcaaatac
atcaacgaccgtggcgacgtcgtggtgcgtaatcatccctttgaaggcattttaaataat
atggacaggcgttaccgcgaaaccgaaagtaacgcggtgcgcgatgagttagccaagttt
atcaacacccaagcttgccaaagctgtggcggctcgcgtctgcgtgaagaagcccgccac
gtgtttataggcgatcttaacctgccgaaactgactgtgtggtcaattggcgaagcccta
gattatttcgacaaactcgagttcactggccaaaaagcccaaattgctgaaaaaatcctc
aaggaagtgcgcgaccgtttaggtttcctcgtcaatgttggcctcaactatttaagccta
tcgcgctcagccgaaaccctctcgggcggtgaagcgcagcgtattcgcttagccagtcaa
attggtgcagggcttgtcggcgtgatgtatgtcctcgatgagccatccatcggtttgcat
caaagggataatgagcgtctgctgcaaaccctgatccacctgcgggatttaggcaacaca
gtgattgtggtggagcacgatgaagatgcgattcgcatggcggatcatattatcgatatc
ggcccaggcgctggcgtgcacggcggcgaagtgatttgtgatggtcccattgagaaaatc
atcgcctgtgacgagtccgtcactggccagtacatttcgggtaaacgcaatattcatatc
agtaccccacgcacgccgttcgatcccaaacaggtaattgagctctatggtgcccgcggt
aataacctgcgtaatgtcgatttaaccattccaataggcttattcacctgcgtgacaggg
gtatcgggctcaggcaaatcaaccctgataaacgacaccttcttcaagatcgcccataaa
atgttaaacggcgccaccgttgacgaaccagcgccttacgatcggattgtcggcatggaa
caatgcgataaagtggtcgatatcgaccaaagcccgattggccggactccgcgatcaaac
cccgccacttatactggcatctttaccccaattcgggagatttttgccggaacgcaggaa
tcccgtacccgtggttatcaggtcgggcgcttttcctttaacgttaagggtggccgctgc
gaggcctgccaaggcgatggtttaattaaagtcgaaatgcacttcctacccgatgtgtat
gtgccctgcgatgcctgtaagggcaaacgttataaccgcgaaaccttagaagtgcgttat
aaaggcaagaatatccacgaagtactgcaaatgacggtagaagatgcacgcgaatttttc
gatgctgtacctgcgattgcccgtaaactgcaaaccctaatggatgtgggcttgtcttac
gtgcggttaggtcagagcgcaacgacgctgtcaggcggtgaggcccaaagggtaaaactg
gccaaggaactatccaaacgcgatacgggtaaaaccttgtatatcttggatgaaccgacc
acgggcttgcactttgctgatatccaattgctactggatgtactgcatcgactcaaatcc
cacggcaacacgattgtggtaattgagcataatctggacgtgattaaaaccgcagattgg
attatcgacttaggcccagagggcggcggtggcggcggcacaatcctcgccacaggtacg
ccagaagacgtcgctctacatcctacctcacacacggcccgtttcttaaagccgctgctg
gagcgtgatgcacagctaaccaaacagcagtag
DBGET
integrated database retrieval system
