Shewanella oneidensis: SO_4034
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Entry
SO_4034 CDS
T00099
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
son
Shewanella oneidensis
Pathway
son03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
son00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SO_4034 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
son03019
]
SO_4034 (deaD)
03009 Ribosome biogenesis [BR:
son03009
]
SO_4034 (deaD)
Enzymes [BR:
son01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SO_4034 (deaD)
Messenger RNA biogenesis [BR:
son03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SO_4034 (deaD)
Ribosome biogenesis [BR:
son03009
]
Prokaryotic type
rRNA helicases
SO_4034 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
HD_4
Cas3-like_C_2
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AAN57008
UniProt:
Q8EA75
LinkDB
All DBs
Position
4189587..4191458
Genome browser
AA seq
623 aa
AA seq
DB search
MSSDERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAF
ALPLLNKVTSQTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNA
LKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQR
QLALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLE
VENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIA
TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE
RATNSRISPMKVPSPETVAERRLSRLGEQLAQTMNNDLEFMREAVAQLCQQLEVDTDLLA
AALLHQVQQERPLQLPAIQERVRDERSERSERGSDRGAERGERRSRESRPMPASLGSAEA
LKDNPDLKMCRYVIDVGRENGVGVGNIVGAIANEANIDSRYIGAIQLYDSVTTVDLPDGM
PKDVLQHLKKVRVCGKPLNIREAGDQVFVDSGRGARSDRRPRSDRPAGDRKPRAASGDKP
FADRKPRSDKPAGERRPRKPREE
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgatgaaagaactttccgtgaactcggcctatccgagaatttgttgcgtgct
cttgacgagctaggttacgaaaaaccaacgccaatccaatcagccagtattgatccactt
atggctggcaaagatattttaggtcaagcgcaaacaggtacaggtaaaactggcgccttc
gcgctgccgctactaaacaaagtcaccagccaaacaacaccgcaaattttagtactcgca
ccaacgcgtgaactagcggttcaggttgctgaagcattcagtagctatgccaaatttatg
aagaatttccatgtactgccaatttacggcggtcaaagcatgcaacaacagttgaatgcc
cttaagcgtggcccgcaagtgatcgtgggtacaccgggtcgtgttatggaccatatgcgc
cgtggcactctgaaactggaaaccttgcaagccctcgttctcgatgaagccgacgaaatg
ttaaaaatgggctttatcgatgatatcgaatggattctggaacacactccaccacaacgc
caacttgccttgttctcggcaaccatgccagagcaaattaagcgggttgctaacaagcat
ttaaaaaatgcgactaatatcagcatcgctgcaagtcacaccacagttgactcaatcgag
caacgttttgtgcaggtgtcacagcacaataaattagaagccttagtacgcgtattagaa
gttgaaaatactgaaggtattatcatcttcgttcgtacccgtaactcatgcgttgaatta
gctgaaaaacttgaagcccgtggctatgcctcatcaccactacacggtgatatgaaccag
caagcccgtgagcgcgcggttgagcagcttaaaaacggcaagctagacattctgatcgca
actgacgttgcggcccgaggtctggacgttgagcgtatcggccacgtagttaactacgat
atcccttacgatactgaagcttacgtacaccgtattggtcgtactggccgtgcgggtcgt
accggtatggcgattctgttcgtcaccagccgtgaaatgcgtatgctgcgcaccatcgag
cgcgcaaccaacagccgtatttcgccaatgaaagtgccaagcccagagacggttgcagaa
cgtcgtctgtctcgcttaggtgagcagctcgctcaaaccatgaataacgatctcgaattt
atgcgtgaagcggttgcccagttatgccagcaacttgaagtagatacggatctgctcgcg
gctgccctgctgcaccaagttcagcaggaacgtccattgcaattacctgcgattcaagag
cgtgttcgcgatgaacgcagtgagcgcagcgaacgtggttcagaccgtggcgctgagcgt
ggtgaacgccgtagccgtgaatcacgtccaatgccagcaagcttaggcagcgctgaagcg
ttaaaagacaatccagacctgaaaatgtgccgttatgtgatcgacgtaggtcgtgaaaat
ggcgtaggtgtaggcaatatcgttggcgccatcgcaaacgaagccaatatcgacagccgt
tatatcggtgcaatccaactttatgattcagtgacaactgttgacctgccagacggcatg
ccaaaagatgtactacaacacctcaagaaagtgcgtgtgtgtggtaagccattgaatatc
cgtgaagctggcgaccaagtctttgttgactctggccgtggcgcccgtagcgaccgtcgt
ccacgtagcgaccgcccagcgggtgatcgcaagccacgtgcagcgtctggtgacaaaccg
tttgcagaccgcaaaccacgttcagacaagccagcaggcgagcgtagaccacgtaaacca
cgcgaagagtaa
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