Shewanella oneidensis: SO_4116
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Entry
SO_4116 CDS
T00099
Symbol
mshH
Name
(GenBank) signalling protein with GGDEF and EAL domains MshH
KO
K18765
RNase E specificity factor CsrD
Organism
son
Shewanella oneidensis
Brite
KEGG Orthology (KO) [BR:
son00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
son03019
]
SO_4116 (mshH)
Messenger RNA biogenesis [BR:
son03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SO_4116 (mshH)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
AF_0924
Motif
Other DBs
NCBI-ProteinID:
AAN57089
UniProt:
Q8E9Z4
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All DBs
Position
complement(4275188..4277098)
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AA seq
636 aa
AA seq
DB search
MKFTRMLTTKLTSFWLMSLAAIAFVFLLCAMMSFVQLTYKFQQQKVAELETLLIEHYHTQ
PDWELESWLPPMLLAFNAVEFRLTMKSEVLFAYQGNVQTQNPMVYTHLLDPQSGLSMTLS
LPQPFDHYSISWYELLILGVGLLAVIALVRFGHIWLSQQLDGIEELAQRSRLILQGKHEQ
ALATPGNGKPRLINRALTKLLEELQDAHKERGRFDKFIRSNTFLDAQTRIGNRLFLNNRL
DALSHDQGMVAHGVIYLLEMDDLDFIQQAKGEGAVKDLLHATVNGINSILQSLPNSIFAR
RTHNQFAIVVPHVSLIEADQLASKLLKVCLSQPLPDGVDNRDNFYHLGCAYFTAGDNVNQ
LLDEADMALRAAQLQGNSNWFMYDKGAIDEEFAKGSVRWRSFLENALVQRRFYPFSQPIM
DSDGVEHHKEIFTRARDNQGALVRATLFIPMANKCGLMPQIERQMIERVLVLLGQEQHKG
QVYSVNLSLDTLMSRAFTHWLKTTLLEYRHLTPQLIFEVSEDIVVQHQDKLQPKLDMISK
MGARLCVDHVGQQVVGTYYIRECHFDMIKLHRSIVRHIHLRPENQLFIRSLIGGLYRTEV
LVSAEGVEVFEEWQTLQILGVGMAQGMYFSDPVELQ
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcactcgaatgttaacaacaaaattaaccagcttttggttgatgtctttggcc
gctatcgcctttgtatttttactttgcgccatgatgagctttgtgcagttgacctataag
tttcagcagcagaaagtggcagagcttgaaaccttgctgatagagcattaccacactcag
ccagattgggagttagaatcctggctgcctcccatgttgcttgcctttaacgccgtcgaa
tttcgtttaaccatgaagagcgaagtgctatttgcctatcaaggcaatgtgcaaactcaa
aatcccatggtgtatacccatttgcttgatcctcagtcgggcctcagtatgacattgagt
ttgccgcaacctttcgaccattacagtatcagttggtatgagctgctcattttgggcgtt
ggcttgctggcggttatcgcgctggtgcgtttcgggcatatatggttatcacaacagttg
gatgggattgaggagcttgcacagcgtagtcgattgattttacagggtaaacatgagcaa
gccctcgctacgcccggtaatggcaaaccaaggttaatcaatcgagcgctgaccaagctg
cttgaggaattgcaggatgctcacaaagaacgcggtcgtttcgataaatttattcgttcc
aatacttttttagatgcacaaacccgtattggtaatcggttgtttttaaataaccgtctt
gatgccttgagtcacgaccaaggcatggtcgctcatggggtgatttatctgctagaaatg
gatgacctcgattttatacaacaggcaaaaggggagggcgctgttaaagatctactccat
gcgacggtcaatggcattaactccattttgcaaagtttacccaatagcatatttgcgcga
cgtacccacaatcaatttgcgattgtagtgccccatgtctccctgattgaagccgaccag
ctcgcgagcaaattgctgaaagtctgcttgagccaacctttgcccgatggcgttgacaat
cgggataacttttaccatttaggctgcgcttactttacggcgggggataatgttaatcag
ctgctcgatgaagccgatatggcgttacgtgcagcccaattacaaggtaacagtaattgg
tttatgtatgataaaggtgcgattgatgaagagtttgcaaagggttcggtgcgttggcgc
agcttcttagagaatgctttagttcagcggcgtttttatcccttcagtcagccgattatg
gattccgacggggttgagcaccataaagagatctttactcgggcgagggataatcaagga
gcattagtgcgggcgacgttgtttatccctatggctaataaatgtggtttgatgccgcaa
attgagcggcaaatgattgagcgtgtgttggttttgcttgggcaagaacagcataaaggc
caagtctacagtgtgaatcttagcctagatactttgatgagccgcgcttttacgcattgg
cttaaaaccaccttgcttgaatatcgccatttgacgcctcaactgatttttgaggtatct
gaggacatagtggtccagcatcaagataaactgcagcctaaactcgatatgatcagtaag
atgggggctcgcctctgtgttgaccatgtagggcaacaggttgttggcacttactatatc
cgagagtgtcatttcgacatgattaaattgcaccgttctatcgtgcgacatattcatttg
cgccctgaaaatcaattatttattcgcagtttaatcggtggtttatatcgtactgaagtg
ctagtgagtgctgaaggcgttgaagtatttgaagaatggcaaaccctgcaaatccttggg
gtggggatggctcagggcatgtattttagcgatcccgtagagttgcaatag
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