Shewanella oneidensis: SO_4241
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Entry
SO_4241 CDS
T00099
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
son
Shewanella oneidensis
Pathway
son03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
son00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SO_4241 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
son03019
]
SO_4241 (recQ)
03400 DNA repair and recombination proteins [BR:
son03400
]
SO_4241 (recQ)
Enzymes [BR:
son01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SO_4241 (recQ)
Messenger RNA biogenesis [BR:
son03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SO_4241 (recQ)
DNA repair and recombination proteins [BR:
son03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SO_4241 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
CpeT
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AAN57212
UniProt:
Q8E9M8
LinkDB
All DBs
Position
complement(4418799..4420622)
Genome browser
AA seq
607 aa
AA seq
DB search
METQLLNTHDDPLSERLAQVFGYRDFRDGQREVIERVCRGEDCLVIMPTGGGKSLCYQLP
ALMMHGITIVVSPLISLMKDQVDSLLQTGVNAAYLNSSQPRELSLEVLRQLHLGELKLLY
VSPERLLTADFIERMQSLPLSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPMMAL
TATADQATRQNICERLGINPFKLLSSFDRPNIRYTVAEKLNAANQLRQFLLQQNGSSGII
YCSSRRRVDEVAERLTLQGFHAKAYHAGMTPEERGEVQDSFLKDQIDIVVATVAFGMGIN
KSNVRFVVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQQ
QVEFHKLNTMAAFAEAQTCRRQVLLHYFDESALEPCGNCDICLDPPKRYNGSEDAQKVLS
CIYRLGQRFGINHLIEVLRGSKGAAIVDRGHDKLSTWGIGKDKSHEYWLSVIRQLIHLGL
ASQDITRGSSITLNPSARPILKGEVALMLAEPRIQLTSIKRKTTQSRVPLNYDRKLFARL
KTLRREIAEEQDVPPYLVFNDATLAEMAAMMPTSPGEMLAVNGVGERKLSRFGGEFLDEI
AAYLAGE
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcagttactcaacacgcatgatgatccgctttcagagcgcctcgcgcaggtg
tttggctaccgtgactttagggacggtcagcgcgaagtcatcgagcgggtatgtcgtggt
gaggattgcctagtgatcatgcctaccggtggcggtaagagcctgtgttaccagttgcca
gcgctgatgatgcatggcatcactatcgtggtttcgccactgatttcattgatgaaagat
caggttgatagtctattgcagacaggtgtgaatgccgcctatttaaactcctcacagcca
agagagctgagtttagaagtgcttcggcagttgcatctcggcgagctaaaattgctttat
gtgtcccccgagcgcttactcacggcagattttattgagcgaatgcagtctctgccgctg
tctatgtttgctattgatgaggcgcactgtatcagccagtgggggcatgattttcggccc
gaatatgccgcgctcggccagttaaaacaactgtttccccatgtgccaatgatggcgctg
acagccactgcagatcaggcaacgcggcagaatatttgtgaacgtttaggcatcaatccc
ttcaagttattatcaagtttcgatcggcctaatatccgttatacagtggctgaaaaactc
aatgcagctaatcaattacggcagtttttgctgcaacaaaatggcagtagcggcattatt
tactgcagcagtcgccgccgggttgatgaagtcgctgagaggctcacgctacaggggttt
catgctaaggcttaccatgcgggaatgacgccagaagaacgtggcgaagtgcaagatagc
tttcttaaagatcaaatagatatcgtggttgcgaccgtcgcctttggcatggggatcaat
aaatcgaacgtgcgctttgtggtgcattacgatatccctaagagtatcgaggcctattac
caagaaactggccgcgcaggacgtgatggactcgaggcggaagcctttatgttgttcgat
cctgccgatattggtcgagtgcgccatctgatagaacagtctgaacctgggccgcagcaa
caagttgaattccataaactcaataccatggccgcttttgccgaggcgcaaacctgtcgg
cgccaagtgctgctgcattattttgatgaaagtgcgttagagccctgcggtaactgcgat
atttgccttgatccacctaagcgctataacggtagcgaggatgcgcaaaaggtactttct
tgtatttatcgactcggacaacgctttggcattaatcatttaatcgaagtattgcgaggc
tcaaagggcgctgcaattgttgaccgcggccacgataagctcagcacttggggaattggt
aaagataagagccatgaatattggctgagcgttattcgccaactgatccatttgggcctg
gcaagtcaagatattactcgaggctcatctatcaccttaaacccctccgcaaggccaatt
ttaaaaggcgaggtcgcgctgatgttggcggagccgcgtattcaacttaccagcataaag
cgtaaaacgacccaatcgagagtgccgcttaactatgatcgcaagttattcgcacgcctt
aaaacactgcgccgtgagattgccgaagagcaagacgtaccgccttatctggtatttaac
gatgcgaccttagcggaaatggctgccatgatgccgacaagccctggagaaatgcttgcc
gttaacggcgtgggagagcgtaaactcagtcgatttggcggcgagtttctcgatgaaatc
gcggcttatttagcgggtgagtag
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