Shewanella oneidensis: SO_4669
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Entry
SO_4669 CDS
T00099
Symbol
polA
Name
(GenBank) DNA polymerase I PolA
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
son
Shewanella oneidensis
Pathway
son03030
DNA replication
son03410
Base excision repair
son03420
Nucleotide excision repair
son03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
son00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SO_4669 (polA)
03410 Base excision repair
SO_4669 (polA)
03420 Nucleotide excision repair
SO_4669 (polA)
03440 Homologous recombination
SO_4669 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
son03032
]
SO_4669 (polA)
03400 DNA repair and recombination proteins [BR:
son03400
]
SO_4669 (polA)
Enzymes [BR:
son01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SO_4669 (polA)
DNA replication proteins [BR:
son03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SO_4669 (polA)
DNA repair and recombination proteins [BR:
son03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SO_4669 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SO_4669 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AAN57628
UniProt:
Q8E8J5
LinkDB
All DBs
Position
complement(4865828..4868596)
Genome browser
AA seq
922 aa
AA seq
DB search
MPTIANNPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYQPSHIAV
VFDAKGKTFRNDLYQEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIGT
IARRASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDFL
ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVSELAFRGSKTMAAKIIDNA
DMLRLSYELATIKTDVELEQDWHELTAKPADRDELIKCYGEMEFKRWLAEILDNKAPATI
ATATTTVETEADTTPSLALETQYDTILTEAQLDEWIAKLKQASLFAVDTETTSLDYMVAE
LVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFALEKLRPILEDAKLKKVGQNLKYDISV
LANAGITLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNIAFEDIAGKGAKQLTFN
QISLETAAPYAAEDADITLRLHQHLWPRLEKEAELASVFTDIELPLIHILSDIERQGVFI
DSMLLGQQSEELARKIDELETKAYDIAGEKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAP
STAEEVLVELALDFPLPKVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATG
RLSSSEPNLQNIPIRTVEGRRIRQAFIAPEGRKILAADYSQIELRIMAHLSQDAGLLNAF
AEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTY
IDTYFARYPGVLRYMEETRASAADLGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAP
MQGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVFEVDADKAETLKQKVCELMAK
AANLDVELLAEAGIGDNWDEAH
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgccgaccatagccaataacccacttgttcttgtggatggatcttcttatttataccgc
gcctattatgcgcctcctcatctgacaaactcaaagggcgaagcaactggggcagtttat
ggcgtagtcaatatgctccgcagtttattgagccgttaccagcctagccatattgccgtg
gtatttgacgctaaaggcaagacatttcgcaatgacttataccaagagtacaaagcgcat
cgcccacccatgcccgatgatttacgctcacaaatcgagccgctacaccgtattattcgc
gccttaggcttgcccctcatttccatacccggcgtagaggcagatgatgtcattggcact
attgctcgccgagcgagccgcgagaatcgcgctgtgctcattagtacgggtgataaagat
atggcgcaattggttgatgaaaatatcacgctaatcaacaccatgacagataccatcatg
gggccagaagaagtcgcagccaaatatggtgtaggcccagacagaattatcgatttctta
gcgctgatgggcgataaggcggataacattcctggtttaccaggtgttggcgaaaaaacc
gctttagccatgctcacgggtgccggaagcgtggctaatctacttgctgaacctgaaaaa
gtctctgaattagcttttaggggctcaaaaacgatggcggcgaagatcatcgataatgct
gacatgctaagactttcctacgaactggccaccattaaaaccgatgtggaacttgagcaa
gattggcatgagcttaccgccaaacccgcagatcgagacgaactgatcaaatgctacggc
gaaatggagtttaagcgctggcttgccgaaattttagataataaagcaccagcaaccata
gcgacggcgactaccacagtagaaaccgaagcagacactacgccaagtctcgcacttgaa
acccaatacgacacgattttgaccgaagctcagcttgatgagtggattgccaagctaaaa
caagcatcactgttcgccgtggataccgagaccacgagccttgactatatggtcgccgaa
ctggttggcatgtccttcgccgtggaagcgggtaaagctgcttacctgcctttagcccac
gattatgttggcgcacctcaacaattagataagcagtttgcgctcgaaaaattacgcccc
attttagaagatgccaagcttaaaaaagtcggtcaaaaccttaaatatgacatcagtgta
ttggccaacgcgggcattacactccaaggtgttgcgtttgacaccatgctcgaatcctat
gtgtttaattctgttgcttcacgccatgatatggacggtttagcactcaaatacctaggc
cataaaaatatcgcctttgaagatattgctggcaaaggagcgaaacagctgacctttaac
caaatttcgttagaaacagctgctccctatgcggcggaagatgcagatattacgctacgc
ctacatcaacacctgtggccaaggctcgaaaaagaagctgaattagcatcggtctttaca
gatatcgaactgccactgatccatattctgtctgatattgagcgccaaggtgtctttatc
gatagcatgttgctcggtcaacagagtgaagaactcgcgcgtaaaatcgatgagcttgaa
actaaagcctatgatattgcaggtgaaaaattcaacttaagctccccaaaacagcttcaa
gtactattttttgaaaagctgggctatccggtcatcaaaaagacacctaagggcgcacca
tccaccgccgaagaagtgctggtcgaattagcattggatttccctctaccaaaggtgatc
ttagagcatcgcagcctaacaaaattaaagagcacgtataccgataagctccccttaatg
gtgaatgcaaaaactggccgagtgcatactagctatcatcaagcgaatgcggcgacgggg
cgtttatcatcgagcgagccaaacctgcaaaatattccgatccgaaccgtagaaggccgt
cgtattcgccaagcctttattgccccagaagggcgtaaaattttagccgctgactattca
cagattgaattgcggatcatggcgcatttatcccaagatgcaggtctacttaacgctttt
gccgaaggtaaagacattcaccgcgccaccgctgccgaagtgtttggcaccgactttgat
agcgtcacctcagaacagcgtcgccgcgctaaggccgttaactttggccttatctatggc
atgtcggcttttggattagcgcgccagctcgacattccgcgcaacgaagcgcaaacctat
atcgacacttacttcgcccgttatccaggagtattaaggtatatggaagaaacgcgagca
agtgcggctgatctcggttacgtatcaacattattcggtcgtcgcctgtatttacccgaa
attcgcgatcgtaatgcaatgcgtcgtcaagctgccgaaagggcggccattaacgcacca
atgcaaggtactgccgcagatatcatcaaaaaagcgatgatcagtattgccgattggatt
aaaactgatacccaaggtgaaatcgccatgatcatgcaagtccacgacgaattagtgttc
gaggtcgatgccgataaagccgagacgctcaaacaaaaagtgtgcgaacttatggctaaa
gcggcaaatctggatgtagaactcctagcagaagcggggattggtgataactgggatgag
gcccactaa
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