Schaalia odontolytica: FBF35_04400
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Entry
FBF35_04400 CDS
T05977
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
soo
Schaalia odontolytica
Pathway
soo03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
soo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
FBF35_04400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soo03019
]
FBF35_04400
03009 Ribosome biogenesis [BR:
soo03009
]
FBF35_04400
Messenger RNA biogenesis [BR:
soo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FBF35_04400
Ribosome biogenesis [BR:
soo03009
]
Eukaryotic type
Pre-60S particles
RNases
FBF35_04400
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
QCT35322
LinkDB
All DBs
Position
1001322..1001969
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AA seq
215 aa
AA seq
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MEGVKTLKDPLVWIDCEMTGLDVSSDALIEVAVVVTDGDLTIVDPGMDVLITPPAEALDN
MNDFVRNMHTSSGLLDDLQTSAVSMEEATEQVLSYIKRFVPQQGKALLAGNSVGTDKMFL
EANMPSVIDHLHYRLVDVSSIKELAKRWYRAAFAESPDKHGGHRALADILESIQELEYYR
RVLFPSEPVTTERAREVAREVVALGIPAMGEAAEA
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atagaaggcgtgaaaactttgaaagaccccctggtctggattgactgcgaaatgaccggc
ctggacgtctcaagcgacgccctcatcgaggtggcggtggtcgtgaccgacggcgacctc
acgattgtcgacccgggcatggacgtgctgatcacgccgcctgccgaagccctcgacaac
atgaacgacttcgtgcgcaacatgcacacctcctccgggctgctcgatgacctgcagacg
tcagctgtgtccatggaagaggcaaccgagcaggtcctgtcctacatcaagcgcttcgtg
ccccagcagggcaaggcgctcctggcgggcaactcggtaggcaccgacaagatgttcctc
gaggcgaacatgccctccgtcatcgaccacctgcactaccgcctggtggacgtctcttcc
atcaaggaactggccaagcgctggtaccgcgccgccttcgccgagtcgcccgacaagcac
ggcggccaccgtgcgctggcggacatcctggagtccatccaggagctcgagtactaccgc
cgtgtgctcttcccgtccgagccggtgaccactgagcgcgcgcgcgaggttgctcgcgag
gtcgtcgccctgggcatccccgctatgggcgaggccgccgaggcctga
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