Sphingobacterium oryzagri: PQ465_00335
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Entry
PQ465_00335 CDS
T10198
Name
(GenBank) integration host factor subunit beta
KO
K03530
DNA-binding protein HU-beta
Organism
sop Sphingobacterium oryzagri
Brite
KEGG Orthology (KO) [BR:
sop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sop03032
]
PQ465_00335
03036 Chromosome and associated proteins [BR:
sop03036
]
PQ465_00335
03400 DNA repair and recombination proteins [BR:
sop03400
]
PQ465_00335
DNA replication proteins [BR:
sop03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
PQ465_00335
Chromosome and associated proteins [BR:
sop03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
PQ465_00335
DNA repair and recombination proteins [BR:
sop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
PQ465_00335
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_2
HU-CCDC81_euk_1
DUF4777
Motif
Other DBs
NCBI-ProteinID:
WDF68846
LinkDB
All DBs
Position
85231..85515
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AA seq
94 aa
AA seq
DB search
MTKAEIIAEISNKTGLEKVDVQETVEAFFKVVKNAMISGENVYVRGFGSFVVKKRAEKTA
RNISKNTAIIIPAHFVPSFKPAKVFVEKVKQGNK
NT seq
285 nt
NT seq
+upstream
nt +downstream
nt
atgactaaagcagaaattattgcggagatctctaacaaaacgggcttagagaaagtagac
gttcaagaaacagttgaagcattttttaaagtggttaaaaatgcgatgatcagtggcgag
aatgtgtatgttagaggttttggaagtttcgtagtgaagaaaagagcagagaagacagcg
cgcaacatctcaaaaaatacagctatcattattccggcgcactttgtgccaagcttcaaa
ccagcaaaggtttttgttgaaaaagttaaacaaggaaacaagtaa
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