Sphingobacterium oryzagri: PQ465_09585
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Entry
PQ465_09585 CDS
T10198
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sop Sphingobacterium oryzagri
Brite
KEGG Orthology (KO) [BR:
sop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sop03032
]
PQ465_09585 (topA)
03400 DNA repair and recombination proteins [BR:
sop03400
]
PQ465_09585 (topA)
Enzymes [BR:
sop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PQ465_09585 (topA)
DNA replication proteins [BR:
sop03032
]
Prokaryotic type
DNA Topoisomerases
PQ465_09585 (topA)
DNA repair and recombination proteins [BR:
sop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PQ465_09585 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Motif
Other DBs
NCBI-ProteinID:
WDF70608
LinkDB
All DBs
Position
2327301..2329712
Genome browser
AA seq
803 aa
AA seq
DB search
MAKNLLIVESPAKAKTIEGYLGKDFLVKSSYGHIRDLVKTDDAIDTEDNFKQKYEVPSDK
KSVVSELKKLAKDAEMVWLASDEDREGEAISWHLYETLSLKDDKTKRIVFHEITKPAILK
AIEQPRKIDYNLVNAQQARRVLDRLVGFELSPVLWKKVKPSLSAGRVQSVAVRLIVERER
EINRFEAEASYKIVAQFTTGKAKEQLKAELPHRFERKEDAAQFLQDCLAAAFAVASLEKK
PAKRSPSAPFTTSTLQQEASRKLGFSVARTMQVAQRLYEAGRITYMRTDSVNLSDTAINA
AQQEIVNAYGEKYHKLRRYRTKAAGAQEAHEAIRPTYFSEHSIDGDNAERRLYELIWKRA
IASQMSEAEFEKTTAKINVSTRSEDLVATGEIMKFDGFLKVYMESTDDDADNSQDQEGDN
TLLPPLEKGQALSLKAMSATERFSRPPARYTEASLVKKLEELGIGRPSTYAPTISTIQNR
GYVVKEDRDGRERHFTVLTIGEGQVLEQLKSETTGAERSKMFPTDIGVLVNDFLVEHFND
IIDYHFTAKVEKEFDEIAQGDKEWTAMLKDFYGPFHEGIEDTLENADRASHERELGTDPA
TGKPVTVRVGRFGPLVQIGAQDDEEKPRFASLRKGQMIETITFEEAMDLFKLPKKVGEFE
EKEMTVAIGRFGPYIRHASAFYSLPKGVDPMEVSEDEAIQIIKEKRQKDIEKVIRVFDEN
PDAQIENGRWGPFIRLGKQNVKIPKGTEIANITYEDVLKWADADPKGKAAAAKKAGAKAT
PAKKTTAKKTTAKKTTSKSKTKK
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaatttactgatcgtagagtcaccggcgaaggccaaaacaatagaaggatat
ttagggaaggactttttggtgaagtccagttatggtcatatccgtgatttggtgaaaacg
gatgatgctattgatacggaagataattttaaacaaaaatatgaagtgccatccgataag
aagtcggtagtcagtgagttaaagaagctagctaaagatgccgaaatggtttggttagcg
tccgatgaggaccgcgagggagaagccatctcgtggcacttatacgaaacactgtcgcta
aaggatgataaaactaaacggattgtatttcacgaaattactaaacctgcgatcttaaaa
gcgatcgagcagccacgcaagattgactacaacctggtgaatgcgcagcaagctcgccgc
gtattagatcgattagtgggttttgagctttcgcccgtcttatggaagaaagtcaagccc
tcactatcggccggacgcgtacaatcggtcgctgttcgtctgattgttgagcgcgagcgg
gagatcaacaggtttgaggcggaggcttcctataaaattgtggcgcagtttacgacaggc
aaagcaaaagagcaactgaaagccgaactgccacatcgctttgagcgtaaagaagatgct
gcgcaatttttacaagattgtcttgctgctgcttttgcggtagcatcgctagagaaaaag
ccggcaaagcgctcgccatcagctccttttacaacctcgacattgcaacaggaagccagc
agaaagctcggtttctcggtggcacgaacaatgcaagtggcgcaacgtttatatgaagct
gggcggattacttacatgcgtaccgattcggtcaatttgagcgatacagccatcaatgcc
gcacaacaagaaattgtaaatgcatacggcgagaaatatcataagttacgccgctacaga
acgaaggcagcgggcgcgcaagaggcgcacgaggccattcgtccgacctatttctcggaa
catagcatcgatggcgacaatgccgaacgacgcttgtatgagttaatctggaagcgtgct
atcgcctcgcagatgagcgaagcagaatttgaaaaaaccacggcaaaaatcaacgtgtct
acgcgtagcgaagacttggtagcgaccggagaaatcatgaaatttgacggtttcttgaaa
gtctatatggaatcgacggatgacgacgctgacaattcgcaggatcaagagggtgataac
accttgttaccgccattagaaaaaggccaggcccttagcttaaaagcgatgtctgctacc
gagcgattttcgcgtccgccagcacgctatacagaggcgtctctggtcaaaaaattggaa
gagttaggaatcggtcgtccgtctacttatgcaccaacgatttctacgattcaaaaccgc
ggctatgtcgttaaagaagatcgtgacgggcgcgagcgccatttcacagtgctaactatt
ggtgaaggccaggtgttggaacagctaaaatcggaaacaacaggcgccgagcgctcaaaa
atgtttccaaccgatattggtgtgctggtaaatgacttcttggttgagcattttaacgat
attatcgattaccattttacggccaaagtagagaaagaatttgacgaaatagcgcaaggt
gataaagaatggacggctatgttaaaggatttttatggtccgtttcatgaaggcattgaa
gatacgttggagaatgccgatagagcgagccatgaacgcgaactcggcacagatccggcc
accggcaagcccgtaacagtgcgcgtaggccgttttggtccgctcgtgcaaataggtgcg
caagatgacgaagaaaaaccccgttttgcgtcgttgcgtaaaggacaaatgatcgaaacg
attacgtttgaagaagcgatggacttgtttaagcttccaaaaaaagtaggggagtttgaa
gaaaaagaaatgacggttgcaattggccgtttcgggccttacattcgtcatgccagtgca
ttttactccttacctaaaggtgtagaccctatggaggtttctgaagacgaagcgatacag
attattaaagaaaaacgccagaaagatattgaaaaagtcattcgcgtgtttgacgaaaat
ccagatgcccaaatagaaaacgggcgttggggaccgttcattcgcttaggaaaacaaaac
gtgaaaattcctaaaggcaccgaaattgcgaacattacgtacgaagatgtattaaaatgg
gccgatgccgatccaaaaggaaaagccgccgccgcaaaaaaagctggagcgaaggcaacc
cctgcaaaaaagacgacagcgaaaaaaacaacggcaaagaagacaaccagcaagagcaaa
acaaagaaatag
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