Sphingobacterium oryzagri: PQ465_12335
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Entry
PQ465_12335 CDS
T10198
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sop Sphingobacterium oryzagri
Pathway
sop03030
DNA replication
sop03430
Mismatch repair
sop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PQ465_12335 (dnaE)
03430 Mismatch repair
PQ465_12335 (dnaE)
03440 Homologous recombination
PQ465_12335 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sop03032
]
PQ465_12335 (dnaE)
03400 DNA repair and recombination proteins [BR:
sop03400
]
PQ465_12335 (dnaE)
Enzymes [BR:
sop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PQ465_12335 (dnaE)
DNA replication proteins [BR:
sop03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PQ465_12335 (dnaE)
DNA repair and recombination proteins [BR:
sop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PQ465_12335 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
HHH_3
Motif
Other DBs
NCBI-ProteinID:
WDF67094
UniProt:
A0ABY7WI75
LinkDB
All DBs
Position
2995234..2998290
Genome browser
AA seq
1018 aa
AA seq
DB search
MYLNCHSYHSLRYGTLAIDTLVKQARAMHITALALTDINTVTGIYDFTKACLAEAIKPIV
GMEIREDNKLLYITLAKHQSGIGEICRLLTDRNVDETPLPTIAPQFAEVITIYPLSNVPE
QLKENEYVGVRPEQVSWLIREPWKPYISRMVILSPVTVSSKTEHNLHRILRAIDLNVILS
KLGDGDTCAVEETLTPLDKLLDHYSSYPQIIANTRKVIESCHFEFDFHTPRNRKHYTENR
QGDIKLLRSLAYAGLKKRYGDNHSTARARVEKELKVIDELGFSGYFLITWDIIRYSNSMG
FMHIGRGSGANRIIAYCLGITDICPLELDLYFERFLNLNRKTPPDFDIDWSWQERDTILQ
YIFDRYGKDHVAFCGTNVEFKYRSIFREVGKVFGLPKEELDALATRSAERDDDSQVVRLV
MKYGKMLEKYPNQRSMHSCGILISEDPITNFTALEMPSKGFPIVQFDMHIAEDIGFEKFD
ILSQRGIGSINDTVKLIKRNKQLHVDIRDTTISKNEARCNEMLSRGQTIGCFYIESPAMR
GLLRRLKCEDYKTLVAASSIIRPGVAQSGMMKEYIFRHNYPDQFEYFHEVFEEHLGDTYG
IMVYQEDVIKIAMHFGGLSAADGDVLRRAMSGKGRSLSALQKVKDNFFSSCADQGHPEEL
SREVYRQIESFAGYSFCKAHSASYAVESYQSLYLKSYYPIEFMVAVINNQGGFYRTEVYV
HEARMSGANILTPCVNKSEYETALYGSDIYLGLMHLHGLEAKIASLIPEERRKHGDFTSI
EDFVRRIPIGLENLQTLVFIGAFRFTGKCKSELLVHSRLLLINFKPEDRNGLLINEPAKT
YKMPTIERSIYEDAFDEIELLSFPVSCSPFDLLQTKYRGHVMAKDLNQQHKRQVKMLAYL
ISRKHVPTKRGTMFFGTWIDANGDYFDTAHFPNSLEHSPFLGGGCYLLLGTVEVDYHFPT
ITVTKMAKMPFIPDPRYSHEKSKAYHAHRQIKEDVSMTNRKPYPLEHEIGLPRKKISI
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgtacctcaactgccactcctaccatagcctgcgctatggcaccctagcgatagacacg
ctggtcaagcaggcgcgtgctatgcacatcactgccctggctcttacggatatcaacacc
gtaacgggtatctacgatttcacgaaggcttgcctggccgaagcgatcaagccgatcgtc
gggatggaaattcgcgaagataataagctgctttacataacccttgctaagcatcaatct
ggcatcggcgaaatctgccggctgttgaccgaccgcaatgtcgacgaaactcctttgcca
accattgctccgcaatttgcagaagtcatcacaatttatccactatccaatgttcctgag
cagcttaaagaaaatgaatatgtaggcgttcgcccggagcaggtaagctggcttattcgc
gagccgtggaaaccttatatctcgcgtatggtgatcctaagtccggttaccgtatccagc
aaaactgaacacaacctgcaccgcatcctacgtgcaatcgatttaaatgtgatcttatcc
aaacttggcgacggtgatacctgcgcagtggaggaaacgttgactccgctcgataagcta
ctcgaccactacagcagttatccgcaaatcattgccaatacgcgcaaggtgatcgaaagc
tgtcattttgaatttgattttcacacaccacgcaatcggaagcattacaccgaaaaccga
caaggcgatatcaaactactccgtagtctggcttatgctggcttgaaaaaacgctatggc
gacaaccattccacagcgcgggcacgcgtggaaaaggagctgaaagtaatagatgaactt
ggctttagtggttattttctcatcacctgggatatcatacggtatagcaacagcatgggt
tttatgcacatcggccggggtagtggcgccaacaggattattgcctattgcctgggcata
accgatatctgtccgcttgagcttgatctctattttgagcgtttcctcaacctaaaccgc
aagacgccgcccgactttgatatcgactggagctggcaggagcgcgatacgatcctgcaa
tatattttcgatcgctatggaaaagatcatgtcgccttttgcggcaccaacgtcgaattt
aagtaccgctccatttttcgcgaagtcggtaaagtatttggcttacctaaagaagagctc
gacgctttggccacgcggtcggcggagcgcgatgacgacagccaagttgttcgtctggtc
atgaagtacggaaagatgctcgagaaataccccaaccaacgaagcatgcactcctgcggt
atcttgatctccgaggatccgatcaccaacttcacggcactcgagatgccgtcaaaggga
tttcccatcgtgcaatttgatatgcatatcgccgaagatattggctttgagaaattcgat
attttatcgcagcgcggtataggcagtatcaacgataccgtcaagctcatcaagagaaac
aaacagctccatgtcgatatccgcgataccacgatctccaagaatgaagcacgttgtaac
gagatgcttagccgtggtcaaacgatcggttgtttttatatcgaatcaccagctatgcgc
gggctgctccgcaggctaaaatgtgaggattacaaaaccctggttgccgcctcatcgatc
attcgcccaggcgtggcacaatctggaatgatgaaagaatacatctttcggcacaactac
cccgatcagtttgaatattttcatgaggtcttcgaggaacacctgggcgatacctacggt
atcatggtctatcaggaagacgtcatcaagatcgcgatgcactttggaggcctttccgct
gccgatggcgatgtactgcgtcgcgccatgagtggcaaggggcgatcactctccgcactc
caaaaagtcaaagacaacttcttttcctcctgtgccgaccaagggcatcccgaagaacta
agccgcgaagtctaccggcagatagaatcttttgccggctattccttttgtaaggcacac
tccgcatcctatgccgtagaaagctatcagagcctgtacttgaaaagctactaccctatc
gagtttatggtagcggtcatcaataatcagggcggcttctatcgcacggaagtctacgtg
cacgaagcacgcatgtctggcgcaaacattctcacgccttgcgtcaacaaaagcgaatat
gaaaccgcactttacggtagcgatatttatctgggcttaatgcacttacatggcctggaa
gctaagattgcaagcttaataccagaagaacgacgaaaacatggtgactttacctccatt
gaagactttgtacgtcgcatacccatcgggttagaaaatctacagacattggttttcatt
ggtgcattccgttttaccgggaaatgcaagagcgagctattggtacattcaagattattg
ctaattaactttaaacccgaagaccgaaacggcctgctgatcaacgagccggcaaaaaca
tataaaatgccgaccattgagcgatcaatttacgaagacgcgtttgatgaaattgaacta
ctaagctttccggtatcatgttcacctttcgacctcctgcaaaccaaataccgcggtcac
gtcatggctaaagatctaaatcaacaacacaagcgacaggtcaaaatgctggcttacctt
atttctcgcaagcacgtgccgaccaaacgcggcaccatgtttttcggcacctggatcgat
gccaacggggattatttcgataccgcacattttccgaatagtctcgagcactctcctttt
ctcggaggcggttgttatcttctactaggcaccgttgaagtcgactaccatttcccgacg
attactgttactaagatggccaagatgccttttattcccgacccacgctattctcacgag
aaaagcaaagcctaccatgcccatcgacagatcaaggaagatgtgagtatgacgaatcgt
aagccttatccgctggaacatgagattggcttgccaagaaaaaaaatatcgatttaa
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