Sphingobacterium oryzagri: PQ465_12960
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Entry
PQ465_12960 CDS
T10198
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sop Sphingobacterium oryzagri
Pathway
sop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PQ465_12960 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sop03019
]
PQ465_12960 (recQ)
03400 DNA repair and recombination proteins [BR:
sop03400
]
PQ465_12960 (recQ)
Enzymes [BR:
sop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PQ465_12960 (recQ)
Messenger RNA biogenesis [BR:
sop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PQ465_12960 (recQ)
DNA repair and recombination proteins [BR:
sop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PQ465_12960 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Motif
Other DBs
NCBI-ProteinID:
WDF67215
LinkDB
All DBs
Position
complement(3153123..3155312)
Genome browser
AA seq
729 aa
AA seq
DB search
MDIEKSLFDNLQEFFGFDTFKGDQEAIITNILNKKDTFVIMPTGGGKSICYQLPALMSEG
TAIVISPLIALMKNQVDQLRAFGGNDSIAHFLNSSLNKSEITKVKQDVTDGKTKLLYVAP
ESLAKEENTQFLKQIKVSFVAVDEAHCISEWGHDFRPEYRKIRQVINGIGANIPIIALTA
TATPKVQSDIRKNLQMNDATLFKSSFNRSNLYYEVRVKKNVVKEIVKFIRANSGKTGIIY
CLSRKKVEEIAEVLNINGIKALPYHAGLDAKTRADTQDKFLMEDVQVIVATIAFGMGIDK
PDVRYVIHHDIPKSMEGYYQETGRAGRDGGEGYCLAFYSEKDVEKLTKFMKDKPVSEREI
GTQILKEVIDYSESSVCRRKQILHYFGEQFDETGCNSMCDNCRTQKTQFDAEASLLEVLG
FVKEQGDKFDDHHIINVMIGQNNQPISSYKHDTHPLFGKGRELGVNYWKSLIRQAELNNF
IKKDIDHYGLLILTESGRKYLANPYAIKFILNRPMEKAEDDSGEEIAGGAGALDTELLKM
LKDLRKKIAKQKSLPPFVIFQDPSLDEMCTHYPVSIDELKQIQGVGGGKASKFGAPFVET
IKKYVEDNDIDRPQDMVVKSTANKSALKVSIIQNIDRKIGLDDIASSKGISYENLLKEVE
SIVNSGTKLNIGYFVDEMIDRDRQDEVYDYFRTAEIDSIKQALDELGEEDYTFEDIQLMR
IKFMSELGN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggatatagaaaaatcactatttgacaatctacaggaatttttcggcttcgatacattt
aaaggtgatcaggaagccatcataacaaatatccttaacaagaaggataccttcgttatt
atgcctacagggggaggaaaatcaatctgttaccagttgcctgcgcttatgagcgaaggc
acggctattgttatttcgccgttgatcgcgcttatgaaaaatcaggtcgatcagctgcgc
gcttttggtggtaacgacagcattgctcattttctaaattcatcattgaataaaagtgag
attacaaaggtgaagcaggatgtgacggatggaaagacgaagttgctttatgtcgcgcca
gaatcattggctaaagaagaaaatacacaatttttaaagcagatcaaggtatcctttgtc
gccgtagatgaagcgcattgtatttctgaatgggggcatgatttccgtccggaataccgc
aaaatacggcaggtaattaatggtattggtgctaatattccaattattgcattaacggct
acagctacaccaaaggtacagtcggatattcgtaagaacttgcagatgaacgatgcaacc
ttgtttaaatcttcgtttaaccgctctaatttatattacgaggtgcgtgtgaagaagaat
gttgttaaggaaattgtcaaatttatccgtgccaatagcggcaagaccggtattatttac
tgtttgagtcgaaaaaaagtcgaagaaatagcggaagtgctcaatatcaatgggatcaag
gcattgccttaccacgctggtttagatgccaagacacgtgctgatacgcaagataaattc
ttgatggaagatgtgcaggtcatcgtagcgacgattgcttttggtatgggaatcgataaa
ccagatgtacgctacgtcattcatcatgatattccgaagtcgatggaaggctattaccag
gagacgggtcgtgctggtcgtgatggcggagagggttactgccttgcattttattctgaa
aaggatgtcgagaaactgacgaaatttatgaaagataagccggtttccgaaagagagatt
ggcacgcagattttgaaagaagtgatcgactattccgagtcatcggtttgtcggcgcaag
caaattttgcattacttcggcgagcagtttgatgagacgggttgtaatagtatgtgcgac
aattgtcgtactcaaaaaacgcaatttgatgctgaggcatccttgctggaagttctgggt
tttgtgaaagaacaaggcgataagtttgacgatcaccatattatcaacgtgatgatcggg
cagaataatcagcccatttcatcgtataaacacgatacacatcctttattcggtaaaggg
cgcgagcttggtgtaaattactggaaatcattgattcgccaagccgaattaaacaatttc
attaagaaggatatcgatcattacggtcttttaatactgaccgaaagcggacgaaaatat
ttggctaacccttatgccatcaagtttatattaaacaggccgatggaaaaagcagaagac
gattcgggtgaggagatcgctggcggcgctggcgcattggataccgaattgttaaagatg
ctgaaagatttgcggaagaagattgctaagcagaaatctttgccgcctttcgtgattttt
caagatccatcgttagacgaaatgtgtacgcactatcccgtcagtattgacgagctgaag
cagatacagggtgtgggcggtggaaaagccagcaagtttggagcgccatttgtcgaaacc
atcaaaaaatatgtcgaagacaatgatatcgaccggccgcaagatatggtggtcaaaagt
acagccaataaatcggctttgaaagtttcaattatccagaatatcgaccggaaaattggc
ttagatgatatcgcgtcatcaaaaggtataagctatgaaaacctcttgaaagaagtggaa
tctattgtcaattcgggcacaaaattaaatattggttattttgtggatgagatgatcgac
cgcgatcgtcaggatgaggtgtatgactatttccgtacggctgagatcgactcgatcaag
caagccttggatgaattgggcgaggaagattatacgtttgaagatatccagttgatgcgt
atcaagtttatgtcagagttaggaaattaa
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