Sphingobacterium oryzagri: PQ465_13230
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Entry
PQ465_13230 CDS
T10198
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sop Sphingobacterium oryzagri
Pathway
sop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PQ465_13230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sop03019
]
PQ465_13230
Enzymes [BR:
sop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PQ465_13230
Messenger RNA biogenesis [BR:
sop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PQ465_13230
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25_NTPase-like
Utp25_C
AAA_22
Cas3-like_C_2
CMS1
HEM4
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WDF67266
UniProt:
A0ABY7WC74
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All DBs
Position
3213160..3214296
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AA seq
378 aa
AA seq
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MTFQELNIIPPIQKAIAEMGYTRPSPIQEKAIPVVLANSDLIGCAQTGTGKTAAFAIPSL
QRIAAQKPKTVGAPRVLVLTPTRELAIQIDENFALYGKYLPLKHTLVFGGVSANMQISSL
KKGTDVIIATPGRLLDLARQKQINLSGIEILVLDEADTMLDMGFINDIKKILTFLPEKRQ
TLFFSATMPPPIRKFATSILRETVEINVNPVSSTAALIEQSVYHVEKPLKPKFLVHLLRK
ESIKQTLVFTRTKHGADRLTKMLKKQGFEALAIHGNKSQGARQKALSEFKKGQIQILVAT
DIAARGIDIDELPHVINYELPEVSETYVHRIGRTGRAGKTGIAVSLCSSEERKNLDGIQK
LTGNKILVEKLSKIGFSA
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgacatttcaagaattaaacatcatcccccctatacagaaagcgattgctgaaatgggc
tatacacgtccatcaccaatccaagaaaaagccattcccgttgtgctggctaatagcgac
cttattggttgcgcccaaaccggaacaggcaaaacagctgcattcgcaattccttcttta
cagcgcattgccgcgcaaaaaccaaaaacggttggcgcgccgcgtgttttggtacttaca
cctacacgcgaacttgcgatacagattgacgaaaattttgcgctatacggcaaatattta
ccgctcaaacacaccttggtatttggcggcgtatcggccaatatgcagatcagcagcttg
aagaaaggaacagatgtcatcattgccacgccaggacgcttactggatttggcacgtcaa
aaacaaattaacctttctggtattgagattttggtattggatgaggcagataccatgctt
gacatgggctttataaacgatatcaaaaagattttgacatttttaccggaaaaacgccaa
actttgtttttttcggcgactatgcccccgccgattcgtaagtttgcgacatcgatcttg
cgggaaactgtagaaattaacgtaaatcctgtatcttcgacagcagcattgattgagcaa
tcggtataccatgtcgaaaagccactcaagcccaagtttttggtgcacttgctgcgcaag
gaaagcatcaagcagacgctggtgtttacacgcaccaagcacggcgcggataggttgacc
aagatgttaaaaaaacaaggtttcgaggcgctggctattcatggaaataaatcgcaaggt
gcacgacaaaaagcactgagcgaatttaaaaaagggcagatacaaatacttgtcgcaacc
gatattgctgcacgcggcattgacatcgacgagttaccacacgtgatcaactatgagctt
cccgaagtatcggaaacttatgtacaccgtataggccggacaggacgagctggaaaaaca
ggtatcgcggtgtcgctttgcagtagcgaggaacgtaaaaacttagatggcattcaaaaa
ttaacgggcaacaagatacttgtggagaaacttagcaaaataggcttttccgcttaa
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