Sphingobacterium oryzagri: PQ465_14405
Help
Entry
PQ465_14405 CDS
T10198
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sop Sphingobacterium oryzagri
Brite
KEGG Orthology (KO) [BR:
sop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sop03016
]
PQ465_14405
Enzymes [BR:
sop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PQ465_14405
Transfer RNA biogenesis [BR:
sop03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PQ465_14405
Prokaryotic type
tRNA splicing ligases
PQ465_14405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WDF67488
UniProt:
A0ABY7WCV8
LinkDB
All DBs
Position
complement(3517195..3518616)
Genome browser
AA seq
473 aa
AA seq
DB search
MENKRINGNDLLALGYAENTALGVALKLNKMRLGYTREQMMTHFAAVLANPDAYINDRVF
KSLALELLKQDELEASYIPLKTADVTYPIYGEEHIEQGAKQQMDIAMALPVSVAGALMAD
AHQGYGLPIGGVLATNNAIIPYGVGVDIGCRMALSIFDLPANYLSVNKDKLEKIILQTTK
FGAGQGFKPGERTNHAVLEQDTFQLNGLLRSLKDKAWAQLGTSGGGNHFVEFGVMTLDKA
DAALGIPAGAYLALLTHSGSRGLGATIADHYTKLAKELCKLPYKAQNLAYLDLKTAEGQE
YWLAMNLAGDYAAACHEVIHTKVFKELGGERLAKVENHHNFAWKEILNGEEVIVHRKGAT
PAGKGVMGIIPGSMASPGFLVRGKGDVAAINSASHGAGRLMSRTQAIKTLSATTLKAMLD
DQGISLIGAGMDEAPMAYKDIHTVMAAQRDLVDVVATFSPKIVRMADDGSRED
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataaacgaattaacggaaacgatctattagctttaggttatgcagaaaatact
gcattgggcgtggccttaaaacttaataaaatgcgattaggatatacgcgcgagcaaatg
atgacacactttgccgctgtgttggccaatccggatgcttacataaatgatcgcgttttt
aaatctttggcccttgagttactaaagcaagacgaattggaggcgagttatatcccgctg
aaaacggcagacgtcacataccctatttatggtgaagagcatattgaacaaggcgccaaa
cagcaaatggatatcgcgatggccttgccggtttctgtcgcgggcgcgttgatggccgat
gcgcaccaaggctatggtttgccgataggcggcgtactggcgacaaataacgccattatt
ccctacggtgtgggggtcgacatcggctgtcgtatggctttgtccatttttgatttgcca
gccaattacctctccgtaaataaggataagcttgaaaaaataatcttgcaaacgacgaag
tttggagcaggacaggggtttaagcccggagaacggacgaatcatgcggtattggagcag
gacacttttcagctgaatggtttattacgatcgttaaaagacaaggcttgggcgcaatta
ggtacttcgggtggcggaaaccactttgtagaatttggcgtaatgacgttggacaaagcc
gatgcggcacttggtataccggctggcgcatatttggctttgcttacgcattcagggtca
cgaggtttgggagcaacaatagcagatcactacacaaaattagcaaaggaactttgtaag
ttgccttataaagcacaaaacttggcttatctggatctgaaaaccgctgaaggacaagaa
tattggctggcgatgaacttggctggcgattatgctgctgcctgccacgaggtcattcat
acgaaagtgtttaaagaacttggcggggagcgcttagccaaagtagaaaaccaccataat
tttgcatggaaggaaatactaaacggagaagaagtgattgtgcatcgaaagggtgccaca
ccagccggaaaaggcgtcatgggcattattccaggatcgatggcttcgcccggctttttg
gtgcgtggtaaaggtgatgtggcggcgataaattcggcttcgcatggtgccggacgttta
atgagtagaacacaagctatcaaaacgctttcggcaactacattgaaagccatgttggac
gatcaggggattagcttaattggcgcaggtatggatgaagcaccgatggcgtataaagat
atccatacggtgatggcagcacaacgtgacctggttgacgtcgttgctacattctcaccg
aaaatagttcgtatggcagacgacggcagtagagaagattag
DBGET
integrated database retrieval system
