Sphingobacterium oryzagri: PQ465_15060
Help
Entry
PQ465_15060 CDS
T10198
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
sop Sphingobacterium oryzagri
Pathway
sop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PQ465_15060 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sop03019
]
PQ465_15060 (rny)
Messenger RNA biogenesis [BR:
sop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PQ465_15060 (rny)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
DUF4407
KH_KhpA-B
KH_2
DUF4954
PFF1_TM
UPF0154
V_ATPase_I
Motif
Other DBs
NCBI-ProteinID:
WDF67618
LinkDB
All DBs
Position
complement(3697170..3698729)
Genome browser
AA seq
519 aa
AA seq
DB search
MELSTTISIIISLIIGVVIGRFLLQLVFKKQEQSAQEKAERIVKEAEQQAEHHKKQRGLE
AKEKFLQLKAEHEKEVNQRNNTLAQKENTLRQKETSLNQKLESINRDKQELDNKSKKLDQ
LVEVNEKKKEEVDLLKNQHIKQLETIAGLSAEEAKEQLVSSLREEARSQAMMQIKDIVDE
AKLTASKEAKKVVIQTIQRTATESAIENTVSIFNIENDEIKGRIIGREGRNIRALEAATG
VEIIVDDTPEAIILSGFDPVRREIARLSLHRLVTDGRIHPARIEEVVAKTRTQIEDEIVE
IGERTAIDLGIHGLHPELIRMVGRMRYRSSYGQNLLQHSREVANFAATMASELGLNVKHA
KRAGLLHDIGKVPDDNPELPHAILGMQLAEKYKEHPDVCNAIGAHHDEIEMTSLISPIVQ
ACDAISGARPGARREVVESYIKRLKELEELALSYPGVEKTFAIQAGRELRVVVESEKVSD
AHAEILAADISNRIQTEMTYPGQIKVTVIRETRSVSYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagttatctacaacaatttcgattataatttcgcttattataggtgttgttatcggt
cgttttttgttacaattagtattcaaaaagcaggagcaatcagcgcaggaaaaggcagaa
cggatcgtaaaggaagctgaacagcaagccgagcatcataaaaagcaacgtggcttagag
gccaaagagaagtttttgcagttgaaagcagaacacgaaaaagaggttaatcaacgtaat
aataccctcgcacaaaaagaaaacaccttacgccagaaagagacatcgctgaaccaaaag
ctggaaagcattaatcgggataagcaagagctagataataaaagcaaaaaactggatcag
cttgtcgaggtaaacgagaagaagaaagaggaagttgatttgttaaaaaatcagcacatc
aagcaactggaaacgatcgcaggcttatcggctgaagaagcgaaagagcaattggtgagt
tctctacgtgaggaagctcgttcgcaagctatgatgcagatcaaagatattgttgatgaa
gcgaaactgacagcttctaaagaggcgaaaaaagtggttatccaaacgattcaacgtaca
gctacggagtcggcaatcgaaaatacagtatcgatcttcaacattgaaaatgatgaaatt
aaagggcgtattattggtcgtgaagggcgtaatattcgagcactagaggcggctacaggc
gtggagattattgtagatgatacgccggaagctattatcctgtcgggttttgacccggtg
cgtcgtgaaattgctcgtttgtccttgcaccgtttggtgacggatggtcgtattcaccct
gcgcgtattgaagaggtggttgctaaaacccgcacgcagattgaagatgaaatcgttgaa
attggtgaacgcacggctatcgatcttggtattcacgggttacatccggaattgatccgc
atggttggacgtatgcgctaccgctcatcttatggacaaaacttgttgcagcactcgcgc
gaagtggcaaatttcgcagcaacgatggcgtcagagcttggcttgaacgtgaaacatgcg
aagcgtgctggcttattgcacgatattggtaaagtgcctgatgataatccggaattgcca
catgctattttaggtatgcaattggcggagaaatataaggagcacccggacgtttgtaac
gctattggtgctcaccacgatgagattgagatgacttcgttgatttcgccgatcgtgcaa
gcttgtgatgcgatttctggtgctcgtcccggcgcgcgtcgtgaagttgtagaaagttat
atcaagcgtctgaaagaactggaagaattggcactttcttatcctggtgtcgagaaaaca
tttgctatccaagctggtcgtgaactacgggtagttgttgaatcggaaaaagtttctgat
gcgcacgcggagatcttagcagctgatatttctaaccgtatccaaacagaaatgacttat
cctggtcagattaaggttaccgttattcgtgaaacgagatcggtttcttacgcgaagtaa
DBGET
integrated database retrieval system
