Sphingobacterium oryzagri: PQ465_16930
Help
Entry
PQ465_16930 CDS
T10198
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sop Sphingobacterium oryzagri
Pathway
sop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PQ465_16930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sop03019
]
PQ465_16930
03400 DNA repair and recombination proteins [BR:
sop03400
]
PQ465_16930
Enzymes [BR:
sop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PQ465_16930
Messenger RNA biogenesis [BR:
sop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PQ465_16930
DNA repair and recombination proteins [BR:
sop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PQ465_16930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
QueC
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
WDF67973
LinkDB
All DBs
Position
complement(4127669..4129570)
Genome browser
AA seq
633 aa
AA seq
DB search
MESKSLAILKQYWGYDEFRPLQHEIIDSILDGRDTLALLPTGGGKSICFQVPALQLAGIC
IVISPLIALMKDQVQNLRKKGIDAVAIFSGMSKREVDIALDNCIYGRIKFLYLAPERLHS
DLVRERIRYMKVNLFAIDEAHCISQWGYDFRPAYLHLTKLRELHPAVPFLALTATATPRV
VDDIQDKLAFVGKQVFRKSFRRENLAYMALAEEDKMGRMLRMIHKLGGCGVIYVRNRRET
AEVSQFLVNHGISADFYHAGLDAATRSRKQDSWMDNKVRVIVATNAFGMGIDKPDVRFVL
HLDVPDSLEAYYQEAGRAGRDGKKAFPVLMFQQADREKLWENFQASFPPINFIQKVYHHL
GNYFQIAYGAGKNMFFDFDLVDFCKRYQLEILPTMSALKFLERDGWLSLSEAVFIPSRFK
FDIDYQELYKFQVQSAKYDPLIKLILRTYGGVFDFFVPVNEFEFAKKMKTSYSNIVDMLT
GLQKLQLATYLPKTDAPQLEFLQARVDYKNLFIDAPFILERKQIKETQIKAIYAYLDTKD
CRSKVLQAYFGEQDDTDCGVCDLCLQRQHKAALEQKLHMEIKTVLLDEAKSVKELVDLLT
IGDDETKIAAIRQLLDDEKILLVDGLYRWNVGF
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggaaagcaagagtttagccatattgaaacaatattggggatacgatgaatttcgtccg
ttacaacatgaaattatcgattccattttggacggacgggataccttagccttgttgcct
acgggtggcggtaagtccatctgttttcaagtgcctgccctacaacttgcggggatatgc
atcgtgattagtcctttgatcgcgttaatgaaagaccaagtccaaaacttgcgaaaaaaa
gggattgatgctgtcgctattttttcgggcatgtctaaacgcgaggttgatattgcgctc
gataattgtatttatgggcggatcaaatttttgtacctcgctccggaacgtttgcatagc
gatttggtgcgggaacgcatacggtacatgaaggtcaatctttttgcgattgatgaagca
cattgcatctcgcaatggggatatgattttcgaccggcttatctacacttgaccaaactg
cgagaactgcatcctgctgttccttttttggcactcacggccaccgctacgcctcgtgtc
gtagatgatatacaagataaacttgcatttgtaggtaaacaggtgtttcggaagagtttt
cgtcgtgaaaacctggcttatatggcgctcgccgaggaagataaaatgggtcggatgctt
cgcatgatccataaattgggcggttgtggcgtaatttacgtgcgtaaccgtcgggaaact
gcggaggtttcgcagtttctggttaatcatggaatttctgcagacttttaccacgcagga
ttggacgcagctacccgatcacgcaaacaagatagttggatggacaataaggtgcgggtt
attgttgcaaccaacgcttttggtatgggcatcgataagcccgatgtacgttttgtgttg
cacctggatgtgcctgattcgttggaagcctattaccaggaagcgggaagagcggggcgc
gatggaaaaaaagcgttcccagtgctgatgtttcaacaggccgatcgcgaaaaattgtgg
gaaaactttcaggcaagctttccgccaattaattttatccaaaaagtctatcaccatctt
ggcaattactttcagattgcttacggagccggtaaaaacatgttttttgattttgacctg
gtcgatttctgtaaacgctaccaactggagattttgccaactatgagtgcattaaaattc
ctggagcgcgacggttggctgagcctttccgaagctgtatttatcccctcccgtttcaaa
tttgatatcgattaccaggagctttataaatttcaggtgcagtctgccaagtacgatccg
ttgatcaaacttattttacggacctacggcggagtttttgatttttttgtgcccgtgaac
gaatttgagttcgcaaaaaaaatgaaaacatcgtacagcaacatcgtcgatatgttgacg
gggttacaaaaactacaactcgctacttatttgccgaagacggatgctccacaactggag
tttttgcaagcgcgagtggactataaaaacctctttatcgacgcacccttcatcttagaa
agaaagcaaatcaaagaaacacagatcaaagcaatttacgcctatctcgatacgaaggat
tgccgaagtaaggtgttacaagcctattttggtgaacaagacgataccgactgcggggtt
tgcgatctttgcttgcagcgacaacataaggctgcgctggagcaaaaactgcatatggag
atcaagaccgtattgcttgacgaagccaaatcggttaaggagctagtcgatttgctgacg
attggtgacgatgaaaccaaaatcgctgcgatacgccaattattagatgatgaaaagatt
ttgttagtcgatggattatatcgttggaatgtaggtttttag
DBGET
integrated database retrieval system
