Sphingobacterium oryzagri: PQ465_17100
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Entry
PQ465_17100 CDS
T10198
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sop Sphingobacterium oryzagri
Pathway
sop03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sop00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PQ465_17100 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sop03021
]
PQ465_17100 (rpoC)
03400 DNA repair and recombination proteins [BR:
sop03400
]
PQ465_17100 (rpoC)
Enzymes [BR:
sop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PQ465_17100 (rpoC)
Transcription machinery [BR:
sop03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PQ465_17100 (rpoC)
DNA repair and recombination proteins [BR:
sop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PQ465_17100 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
tRNA-synt_1c_C
Motif
Other DBs
NCBI-ProteinID:
WDF68006
UniProt:
A0ABY7WHL9
LinkDB
All DBs
Position
complement(4171808..4176085)
Genome browser
AA seq
1425 aa
AA seq
DB search
MSYKKDNKIKSNFTSITISLASPETILERSSGEVTKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHISLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDMIIYYERYVVIQPGIKEEDGISFMDFLTEEEYLDILDTLPKENQYLDD
TDPQKFVAKMGAEAMEELLKRIDLDQLSYDLRHQAANETSQQRKNEALKRLHVVEAFRGA
NGRIENRPEWMIVKIVPIIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLKLHECGLPKDMAAELYKPFIIRKMIERGIVKTVKSAKKIVDRKDP
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPTLVEGKAIQLHPLVCTAFNADFDGDQM
AVHLPLGNAAILEAQILMLASHNILNPANGSPVTVPSQDMVLGLYYITKGRRSVETHKVR
GEDMIFYSPEEVIIALNENKIDLHAFIKVKTKAKNKEGQIVDVLLETTVGRVIFNQVVPE
EVGFINELLTKKSLRNVIGEIVKNTGMARAAQFLDDMKELGFQTAFKGGLSFNLQDLNIP
AAKVDLITQATNEVDEVKNNYNMGFITNNERYNQIIDIWTRINNKLTAHVMDILSNDNQG
FNSVYMMLDSGARGSKEQIRQLCGMRGLMAKPQKSGTSGGEIIENPILSNFKEGLSVLEY
FISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVVEEDCATLRGIYKTALRENDDIV
EPLYDRILGRTPLNDVFHPETGKLIIAANIDISEEVAQEIEDAGIEGVEIRSVLTCESKR
GVCACCYGRNLASGKRVQLGEAVGVIAAQSVGEPGTQLTLRTFHVGGTASNIAADSSIVA
KYDGKIEFENVRSVAKEGEDGPYQVVIGRSGEIRIVNDEKKVLYNQVIPYGANLYVNEGD
QVEKGKNLVDWDPYNAVIISEFGGKIEFEAIIEGVTFRDESDEQTGHKEKVIIETRDKTK
NPTIKIADLTGDTLRSYNIPVGAHVSVQDGQKIKEGTILAKIPRATGKTRDITGGLPRVT
ELFEARNPSNPAVVTEIDGIVTLGGVKRGNREISIESRDGQIKKYLVPLSKHILVQDNDF
VKAGMPLSDGSISPGDILSIKGPAAVQEYIVNGIQEVYRLQGVKINDKHFETIVHQMMQK
VNIEDPGDTRFLEKEAVNKWDFMQENDSLFDKKVVVDAGDSKTLRPGQIVTMRKLREENS
TLRRQDLKTVDVRDAISATSSPLLQGITRASLGTKSFISAASFQETTKVLNEAAIAGKRD
DLLGLKENVIVGHLIPSGTGLRNYGNIIVGSREEYDQLLASKEED
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaaaaaagataataaaatcaaaagtaactttacatcgattacgatcagctta
gcttctccagaaactattttggagcgttcaagtggtgaagttaccaaaccagagacgatt
aactatcgtacctacaaaccagaacgtgatggtttattctgtgagcgtatctttggtcct
gtaaaggactacgaatgtcactgtggtaaatacaaacgtatccgttataaaggtatcgtg
tgtgaccgttgtggtgtggaagttaccgagaaaaaagtacgtcgtgagcgtatgggacac
atcagtttggtggttcctgtggcacacatttggtatttccgttctcttccaaataaaatt
ggttatttactaggtcttccaaccaagaaattggatatgatcatctactacgagcgttac
gtggttatccaaccaggtatcaaagaagaggatggcatttccttcatggatttcttgaca
gaagaagaatacctggatattttagatacgttaccgaaagaaaatcagtacttagacgat
acagatcctcagaaatttgtagcgaaaatgggtgctgaggcgatggaagagttgttgaaa
cgtatcgatttagatcagctatcatacgacttgcgtcaccaggcggcaaacgaaacttca
caacaacgtaaaaacgaggcgttgaaacgtcttcatgttgtggaagctttccgtggtgct
aacggccgtatcgaaaaccgtccggaatggatgatcgtgaaaattgtacctatcattcca
ccagagttgcgcccattagtgcctttggatggtggtcgttttgcgacttccgatttgaac
gatttgtaccgtcgtgttattatccgtaacaatcgtttgaaacgtttgatcgagatcaaa
gcgccagaagttatcctgcgtaacgaaaaacgtatgttgcaagaagcggttgactcgttg
tttgacaactcgcgtaaagtaaacgcagtgaaaaccgaaggtaaccgtgcgttgaaatct
ctatcggatatcctgaaaggtaaacaaggtcgtttccgtcaaaacttgttaggtaagcgt
gtggattattcggctcgttcggtaatcgtcgtgggacctaacttgaaattgcacgagtgt
ggtcttccgaaagatatggctgcagagctttataaaccgtttatcatccgtaagatgatt
gaaagaggtatcgtaaagacggtaaaatcagctaagaaaatcgttgatcgtaaagatccg
gttgtatgggatatcctggaaaatgtgttgaaaggtcacccggtattattaaaccgtgca
cctacgcttcaccgtttgggtattcaggctttccaaccaacgttggtagaaggtaaagct
atccagttacacccattagtgtgtacagcattcaacgccgatttcgacggtgaccagatg
gcggttcacttacctttaggtaatgctgcaattttggaagcgcaaatcttgatgttggcg
tcgcacaacattcttaaccctgcgaacggttctccggtaacggttccttcacaggatatg
gtattgggtctttactatattacaaaaggccgcagatctgttgagacccacaaagtaaga
ggtgaagacatgatcttctattctccggaagaagtgattatcgctttgaacgagaataag
atcgacttacacgcttttattaaggttaagacgaaagcaaaaaataaagaaggacaaatc
gttgatgtattacttgaaactacagtaggccgcgtaatctttaatcaggttgtacctgag
gaggttggttttatcaacgaattgttaacgaaaaagtctttgcgtaatgtcattggcgag
attgtaaagaatacgggtatggctcgtgctgcacaattcttggatgacatgaaagagctt
ggattccaaacagccttcaaaggtggtttgtcgttcaacttgcaagacttaaatattcca
gcggctaaagttgatttgattacgcaagcaacaaacgaagttgatgaggtgaagaataac
tataacatgggtttcatcactaacaacgaacgttacaaccagattatcgatatctggacg
cgtatcaacaacaaattgacggcgcacgttatggatatcctatccaatgacaaccaaggt
ttcaactctgtttacatgatgttggattctggagcgcgtggatcgaaagagcagattcgt
cagttgtgtggtatgcggggattgatggcgaaaccacagaagtctggtacttccggtgga
gagatcatcgaaaacccgatcttatccaactttaaagaaggtctttccgtattggagtac
tttatctctacccacggtgcgcgtaaaggtcttgccgatacagcgttgaaaacggcggat
gcgggttacttaacacgtcgtttgcatgacgttgcacaagatatgatcgttgtggaagaa
gattgtgcgacattgcgtggtatctacaaaacagcattgcgtgaaaacgatgatatcgtg
gaaccattgtatgacagaatcttgggacgtacaccgttaaacgatgttttccatccagaa
actggtaaactaatcatcgcggcaaacatcgatatctctgaagaggtagcgcaagaaatc
gaagatgcaggtattgaaggtgtagagattcgttcggtattgacttgtgagtcgaaacgt
ggtgtatgtgcttgttgttacggacgtaacttagcttctggcaaacgcgttcaattaggc
gaagctgtgggtgtaatcgcagcgcagtctgtcggtgagccaggtacacagttaacactt
cgtacgttccacgtgggtggtacggcatctaacatcgccgctgattctagtatcgtagca
aaatacgatggtaaaatcgaattcgaaaacgtacgctcggtagcgaaagaaggcgaagat
ggcccttaccaagtggtaatcggtcgttctggtgagattcgtatcgtaaatgatgagaaa
aaagtactttacaaccaggttatcccttacggtgctaacttatatgtaaacgaaggtgat
caagttgaaaaaggtaaaaacctagttgactgggatccatataatgcggtaatcatctct
gaatttggtggtaaaatcgaattcgaagccattatcgaaggtgtaacattccgcgatgag
tctgatgaacaaacaggtcacaaggagaaagttattatcgaaacacgtgataaaacgaaa
aacccaacaatcaagattgcggatttgacgggcgacacgttacgttcatataacattccg
gttggggcccacgtttcggttcaagacggacagaaaatcaaagaaggtacgatcttagct
aagattccacgtgctacaggtaaaacccgagatattacggggggtcttccacgggtaaca
gaattgttcgaagcgcgtaacccatccaatccagctgttgttaccgaaattgacggtatc
gttactctgggtggtgtgaaacgtggtaaccgcgagatttctatcgagtctagagatgga
cagatcaagaaatacttggtgccgctttcgaaacacatcctggtacaggataatgacttt
gtgaaagctggtatgccattgtctgatggttctatctctccaggtgatatcctgtcgatc
aaaggaccagcagcggtacaagaatatatcgtgaatggtatccaagaggtttaccgctta
caaggggtaaaaatcaacgataaacactttgaaaccatcgttcaccagatgatgcagaaa
gtgaacatcgaggatccaggtgataccagattcttggaaaaagaagcggtaaacaaatgg
gacttcatgcaagaaaacgactcactattcgacaagaaagtggttgtagacgccggtgat
tcaaaaactttacgcccaggccaaatcgttacgatgcgtaagcttcgtgaagaaaattcg
acacttagacggcaagatttgaaaactgtagacgttcgcgatgcgatctctgcaacatca
agcccattactacaaggtattacacgtgcatcgttaggtaccaaatcgtttatctcagca
gcgtccttccaggaaactacgaaggtgcttaacgaagctgcaattgcaggtaaacgtgat
gatttgttaggcttgaaagaaaacgtaatcgtaggtcacttgattccttcaggtactggt
ttacgtaactacggcaacatcatcgttggttctcgtgaagagtacgatcaactattagct
tcgaaagaagaagattaa
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integrated database retrieval system
