Spirosoma oryzicola: LQ777_05070
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Entry
LQ777_05070 CDS
T08981
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
soq
Spirosoma oryzicola
Pathway
soq03410
Base excision repair
soq03430
Mismatch repair
soq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
soq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LQ777_05070 (recJ)
03430 Mismatch repair
LQ777_05070 (recJ)
03440 Homologous recombination
LQ777_05070 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
soq03400
]
LQ777_05070 (recJ)
DNA repair and recombination proteins [BR:
soq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LQ777_05070 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LQ777_05070 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LQ777_05070 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UHG92278
LinkDB
All DBs
Position
complement(1253162..1254901)
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AA seq
579 aa
AA seq
DB search
MIAQPPPPQKRWISKNFPSSAEQRSAIESLTQSLNVSPFLAALLVQRGIHTFDEARSFFR
PEIGHLHDPFAMKDMDRAVKRLQRAMRPEQPEKILVYGDYDVDGTTSVAMVYGFLKNYHS
AIDYYIPDRYKEGYGISQQGIQWAAENGFTLIIALDCGIKSIDRVAEAKALGVDFIICDH
HRPGLDIPDAAAVLDPKRDDCAYPYKELSGCGVGFKLLHAFCLRQQIDLGELYPYLDLVA
VSIASDIVPLTGENRVLAYFGLKYINSSPRTGLKALIKIAGFSRELDITNVVFGLGPRIN
AAGRIQHAKAAVQLLLAESEEEADAFAMAINKHNNSRREFDSTITEQALSMIRQNETMLT
AKTTVLYDANWHKGVIGIVASRCIEHFHRPTIILTQSHDKAAGSARSVPGFDVYEAIEEC
ADLLEQFGGHTFAAGMTMPVDNIDAFRQKFEEVVSRKIKEEHLTPLIDIDLPIDFSEIND
KLFRILRQMGPFGPHNMQPVFMTEDVYLVSDPVIMKEKHLKISVRQGRTGHTLTGVGFGF
GHMADQLRYGKPFSICYQVEQNVYNGNVSLQLMLKDIRC
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgatagcccagccgccacctccgcaaaaacgatggatctccaaaaacttccccagttcg
gcggaacagcggtcggcgattgaatcattgacacagtcgctcaacgtcagccccttcctg
gcggcactgctggtgcaacgtggtattcataccttcgacgaagcccgttcctttttccgg
cccgaaatcggccacctccatgaccccttcgctatgaaggacatggaccgggctgtcaag
cggctgcaacgggcaatgcgccccgaacagccggaaaagattctcgtctatggcgactac
gacgttgacggtaccacatcggtagccatggtttatggttttctgaaaaactaccactcc
gccatcgattattacataccggatcgttacaaagaagggtacggcatttcgcagcaaggt
attcagtgggccgccgaaaacggttttaccctgatcattgcccttgactgcggtatcaaa
tcgattgatcgggtagccgaagctaaagcactcggcgttgacttcatcatctgcgaccac
caccgccccggcctcgacattcctgatgcagcggctgtactagaccctaagcgtgacgac
tgtgcgtatccttataaagaactgagtggctgcggtgttggttttaaattactgcacgct
ttctgcctgcgtcagcagattgatctgggcgaactctacccgtacctcgatctggtagcg
gtcagtattgcctccgacattgtaccgctgacgggcgaaaatcgcgtactggcgtatttt
ggcttgaaatacatcaattcgagtccacgcacgggcttgaaagctctgatcaaaatagcc
ggtttttcgcgggaactggacatcaccaatgtggtcttcggattaggtccccggatcaat
gccgccggacgaattcaacacgccaaagcggctgtccaacttttgctggccgaatcagaa
gaagaagccgatgcgtttgcaatggcgattaataagcacaacaacagccgacgcgaattc
gacagcacgattacggaacaggctttgtcgatgattcggcaaaacgaaaccatgttgaca
gccaagacgactgtgctctacgatgccaactggcataagggtgtcattggcatcgtggcg
tcgcgctgcattgaacattttcaccgaccaaccatcatactaactcaatcgcacgacaag
gctgccggatcggcgcgctcggtgccgggttttgatgtgtacgaagccattgaagaatgc
gccgacttactggaacagtttggaggccatacttttgctgccggaatgaccatgccggta
gacaacattgacgcgtttcgtcagaaatttgaggaagtggtatcgcgtaagatcaaggag
gaacacctaacccccctgatcgatattgatctgcccatcgatttcagcgagatcaacgac
aaacttttcaggattctgagacaaatgggtccgtttggtccgcacaacatgcagccggtg
tttatgacggaggatgtgtatctggtcagcgatccggttatcatgaaagaaaagcacctg
aagatcagcgtgcgccagggtcggactggtcatacactgacgggggttggattcggcttc
ggacacatggccgatcagcttcggtacggtaaaccgttctccatctgttatcaggtagaa
caaaacgtttacaatggcaacgtttctttgcaactgatgctgaaagacatacgctgctag
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