Spirosoma oryzicola: LQ777_06975
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Entry
LQ777_06975 CDS
T08981
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
soq
Spirosoma oryzicola
Pathway
soq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LQ777_06975 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soq03019
]
LQ777_06975 (recQ)
03400 DNA repair and recombination proteins [BR:
soq03400
]
LQ777_06975 (recQ)
Enzymes [BR:
soq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LQ777_06975 (recQ)
Messenger RNA biogenesis [BR:
soq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LQ777_06975 (recQ)
DNA repair and recombination proteins [BR:
soq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LQ777_06975 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
PSD2
Motif
Other DBs
NCBI-ProteinID:
UHG92640
LinkDB
All DBs
Position
complement(1717459..1719591)
Genome browser
AA seq
710 aa
AA seq
DB search
MTSEAPIRSQNPADYLKRYYGYDSFRPMQEAIIQSVLSGRDTVVLMPTGGGKSVCFQIPA
LMLPGVTIVVSPLIALMKDQVNALHMNGIQAAYINSTQHGREQRDIEEDAHSGNLKLLYV
SPEKLLSESFLNFLQRINVSLFAIDEAHCISSWGHDFRPEYTQLAILKERFPHVPTVALT
ATADKLTRQDIAERLSMNDPEVFVSSFNRTNLSLQVLPGQNRIQQIVKLLQQKPNTSGII
YCLSRKSTESLAAKLQEKGFNAAFYHAGMDPAERSRTQEAFLRDDVRIMCATIAFGMGID
KSNVRWVIHYNMPKNIEGFYQEIGRAGRDGAAAQTVLFYSFADVATYKDMLSENSPANLG
LQLAKLERMQQYADAHTCRRQILLSYFSEELPEPCGNCDVCRDPRVTFDGTILAQKALSA
MVRTGERVPMNLLIDILRGSRSQQVMQNGYDQVKTYGAGRDLRFEDWRNYLHQLINIGVI
EVAYDHHYALRRGILADQVLYGGRKIELVRPDDAPKPVVEKPKAKTETNRDELFERLRAL
RKQIADQQNVPPYVIFTDTTLEDMARLRPTTPDALRNVSGVGERKLQLFGKRFLSEIVGY
VKGRVQAGEKPKGSTQLMTLDLYNSGMSIDEIAAERKLTAGSIAGHLVQLAKAGYAIDLE
SLISPDERREIEKAVALVGLEEGRLKPVFDYLGGRYDYSKLTLVVGLMEG
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgaccagtgaagcccctattcgttcgcagaatcccgctgactacctcaaacgttactat
ggctacgatagcttccggcccatgcaggaggctattatccagtcggtgctaagcgggcgc
gacaccgttgtgcttatgccaacggggggcggcaaatccgtctgctttcagattccggcc
ctgatgcttccgggcgtcacgatcgtcgtttctccgctgatcgcgctcatgaaagatcaa
gtcaatgcgctgcatatgaacggtatccaggcggcttatatcaacagcacacagcatgga
cgtgagcaacgcgatatcgaagaggatgcgcacagtggcaatcttaaactactttacgtt
tctcccgaaaagctgctgtcggaatcgtttcttaactttctgcagcgcatcaacgtttcg
cttttcgccatcgacgaagcacactgcatttcgtcgtggggccatgatttccgaccagaa
tatacccagttagcaattctgaaagagcgattcccgcacgtaccgaccgttgcgctgacg
gccaccgccgataagctaacccggcaggatattgccgagcgactgagcatgaatgatccg
gaggtctttgtatcgtcgtttaaccggacaaacctgagtttgcaggttctacccggccag
aaccgcattcagcagatcgttaaacttttgcagcaaaagcccaacacctcgggcattatt
tattgcctgagccgaaaatcgaccgagtcgctggcggctaagttgcaggagaaaggtttc
aacgcggctttttaccacgcgggcatggaccccgccgagcgctcccgtacgcaggaggct
ttcctccgcgacgatgtacggatcatgtgcgcgaccattgcgttcggcatgggcatcgac
aaatcgaacgtgcggtgggtgattcattacaacatgcccaaaaacatcgagggtttctac
caggaaatcgggcgggcgggccgcgacggggctgcggctcagacggtgctgttttacagt
tttgccgacgttgccacctacaaagacatgctgtccgaaaacagcccggctaaccttggt
ttgcaactagcaaagctggaacggatgcagcaatacgccgatgcccatacctgtcgccgt
cagatcctgctctcctacttttcggaagaactgcccgaaccctgcggcaactgcgacgtt
tgccgtgatccgcgcgtaaccttcgacggtactattctggcccagaaagccttatcggcg
atggttcgaacaggtgagcgcgtacccatgaatctgctgatcgatattttgcgcggctcc
cgcagtcaacaggttatgcagaatggctacgatcaggttaaaacgtacggcgcgggtcgc
gatcttcgttttgaagactggcgcaactacctgcatcagctaatcaacatcggcgttatc
gaggttgcctacgaccatcattacgccttacgccgggggattctggccgatcaggtactg
tatggcggacgtaagatcgagcttgtccggcccgatgatgcaccgaaacccgttgttgaa
aaaccaaaggcaaaaaccgaaaccaaccgcgacgaactcttcgagcgactacgggcactg
cgcaagcagattgccgaccagcagaacgttccaccttacgtgatttttaccgacacgacg
ctggaagatatggcccggctgcggccaaccactcccgacgccttacgcaatgttagtggg
gtgggcgaacggaaactgcaactgttcggaaagcgattcctcagcgaaatcgtcggctac
gttaaggggcgggtgcaagctggtgagaagcccaaaggatcaacccagctaatgaccctt
gacctttacaacagcggtatgagcattgatgagattgccgccgaacgcaagctcactgcc
ggctctattgcgggccatttggtccagttagcaaaggccggttacgccattgatctggag
tcgctaatcagtcctgacgaacggcgggagatcgaaaaagcggttgctctggttggcctg
gaagaaggccgtttaaaacccgtttttgattatttaggcggtcgttacgattacagcaag
ctaacgctcgtagtaggattaatggaaggctaa
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