Spirosoma oryzicola: LQ777_08755
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Entry
LQ777_08755 CDS
T08981
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
soq
Spirosoma oryzicola
Pathway
soq02020
Two-component system
soq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
soq00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LQ777_08755 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LQ777_08755 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soq03021
]
LQ777_08755 (rpoN)
Transcription machinery [BR:
soq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LQ777_08755 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
DUF1474
LacI
Arfaptin
HTH_12
Motif
Other DBs
NCBI-ProteinID:
UHG92977
LinkDB
All DBs
Position
2159399..2160850
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AA seq
483 aa
AA seq
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MQKLSLSQSLQQKLSPQQIQFIKLLQIPTAELDTRIEEELEVNPALEEGMDDDYDQREDD
SFADDYEDDYKDRNDDLDIDSYIRDEDYAGYKMQGDGNYGEEDRDMPLATSSSLLDSLMQ
QFGYLHLTETQRIIGLQLIGSIEADGYIRRSMQAIVNDLAFSQNVFTDTDELEDVLQKIQ
TFDPPGIAARSLQECLVLQLRRKDTSDPYIILAIRIIEDFFEEFSKKHFDKIQRRLNISD
ESLKKVIDIIIKLNPKPGSVEGEAGTIQYLIPDFILTNNNGKLDLTLNSKNAPELRISRS
FADMLDTYDKSSKQNKSLKETVSFVKQKLDAAKWFIDAIKQRQQTLLKTMNAIVRFQYDF
FMTGDESKLRPMILKDIATLIDMDVSTVSRVANSKSVQTEFGIYPLKYFFSEGIATDSGE
DVSSREVKNILKDLIDNEPKLNPLSDDKLEKILNDRGYNIARRTVAKYREQLNIPVARLR
KEL
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagttaagcctttcccagtcgcttcagcaaaaactgtctcctcaacaaattcag
tttatcaagctgttgcaaattcctactgccgaactcgacacgcgtattgaggaagaattg
gaagtcaacccggcattagaagagggaatggacgatgactacgatcagcgggaggacgat
tccttcgccgacgactacgaagacgattacaaagaccgtaacgacgacctcgacatcgat
agctacatccgcgacgaagattatgcgggctacaaaatgcagggcgatggcaactacggt
gaagaagatcgcgatatgccgctggctaccagttcgagcctgctggattcgctgatgcag
caattcggttatctacaccttacagaaacgcagcgaattattggccttcagcttatcggt
agcatcgaagcggatgggtacatccggcggtcaatgcaggccatcgtcaatgatcttgct
ttttcgcaaaacgtatttaccgataccgatgagctggaggatgttcttcaaaaaatccag
acgtttgatccacccggcattgcggctcgttcgttgcaggaatgcctcgtgttacagctt
cggcgcaaagatacctccgatccgtacatcattctggctatccgcattattgaagatttc
ttcgaagagttttcgaaaaagcatttcgataaaatccagcgtcggctcaacatcagcgac
gagtcgctgaaaaaagtaatcgacattatcatcaagctgaatcccaaaccaggttctgtc
gagggtgaagcagggacgattcaatacctgattcctgacttcattctaaccaataacaat
ggcaaacttgatttgacgctgaactccaaaaacgcgcccgagctacgcatcagtcgttcg
tttgccgacatgctcgatacctacgacaaaagcagtaagcagaataaatcgcttaaagaa
accgtctcgttcgtcaaacagaagcttgacgccgccaaatggtttatcgacgccatcaag
cagcgccagcagacgctactcaaaacgatgaatgccattgtacgttttcagtacgatttc
tttatgaccggcgacgaatcgaaattgcggcctatgatcctgaaagacatcgccaccctg
atcgatatggacgtttcgacggtgtcgcgggtagccaacagtaagtcagtgcaaaccgaa
ttcggaatttatccgcttaaatatttcttctccgaaggtatcgcgaccgattcaggggaa
gatgtcagcagccgcgaagtgaaaaatattctcaaggatctgattgataatgaaccaaag
ctgaatccgctttcagacgacaagctcgaaaaaattctgaatgaccggggttacaacatt
gcccgtcgtacagttgccaagtaccgagagcaactgaatattccggtggcccgactaaga
aaagaactttaa
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