Spirosoma oryzicola: LQ777_09040
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Entry
LQ777_09040 CDS
T08981
Name
(GenBank) Ig-like domain-containing protein
Organism
soq
Spirosoma oryzicola
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_9
Cadherin_5
Cadherin_4
Motif
Other DBs
NCBI-ProteinID:
UHG93029
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All DBs
Position
2225826..2231093
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AA seq
1755 aa
AA seq
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MSRCRDCFTWGLMMLMAFAFQARAQQSAATCNTFAPLTSPTFGNLSVTSSQIPVFGGDQF
ANKGRVIDNDLTNTAAYSFLVAGSAYLEVKDNNATGANLYPAGTFAGFVVSDNTILSAFG
TTTITTYEGNTLQETSTTGSLLATGIASGQAQLGFITTKPFDRIRVTFSALGAGTVSVYY
AVVQRYCASQTLACNTPTPVNNPAFAVAVSPANTGVSGVNVGSISNANNAVSNDNTDFAS
VNIIANVGTASFAIKDQVTDYPAGTFAGLDISRSGLLSVGALSDLTISTYLNGVATGQSV
SGSSLLAVGSSILNGTGRQTVGFVATQPFDEIKLTFSGVTIGVTNIYGAVFQRFCAGTQL
ACNVLTPVANPAQPVYVDGRNTGIDATLCAACSINNSQNAIDSDPSNFASIELTAGVATS
ASFAVANAIDTYAVNSFAGFDIETNSLLNANALSTATISLYNNGALVQTGTGNALIVGAT
TGLQDGRSRQIVGIVANVAYDEVKVTFAQVASANLGSVRIYSAVLENTCATSIVCNTAYN
LSSPAFPAVIDGARTGVSGAVGVTLSSANVLNAQNVISASTTDFARITNTASVAAVTSIA
VLDPVNTFPVGTFAGFTIRRVNGLVAADLFDQLTVTTYLDGVQQEVRSGRGALLDLSVAL
FGSTSNFVNVGFATTKAFDEIQLSVAPLVGLGVLGGGLDVFGAFIDTRTSTGGSLVCALN
TNPDFTVTNINVPVSGSVRTNDNVPAGTTYGPAATLISQPGGSTPTLTLNNDGSFNFTSA
TAGVYVYSIPVCPAGTTTGCQTQTLTVTVLNPGVTTNNPVANPDFATITGAAANPGSVTI
DVTANDGPGNTGGTLGTPTIAAAPANGSASINGSGNLVYTPTAGFVGTDVVTYQVCETPG
GLCATATVTIRVNAAGSPAVVSINDDYVSTPNGTPATGNLLDNDLGTGLTVSNPGTTVTS
SGTLVTTANGGFSFSATPGTTGPATFTYTACDNASNCGTATLHVLVGQPVTPAPVLNTNP
DFTVTNINVPVSGSVRTNDNVPAGTTYGPAATLISQPGGSTPTLTLNNDGSFNFTSATAG
VYVYSIPVCPAGTTTGCQTQTLTVTVLNPTVTTNNPVANPDFATITGAAANPGSVTIDVT
ANDGPGNTGGSLGTPTIAAGPANGSASINGSGNLVYTPAAGFVGTDVVTYQVCETPGGLC
ATATVTIRVNAAGSPAVVSINDDYVSTPNGTPATGNLLDNDLGTGLTVSNPGTTVTSSGT
LVTTANGGFSFSATPGTTGPATFTYTACDNASNCGTATLHVLVGQPVTPAPVLNTNPDFT
VTNINVPVSGSVRTNDNVPAGTTYGPAATLISQPGGSTPTLTLNNDGSFNFTSATAGVYV
YSIPVCPAGTTTGCQTQTLTVTVLNPTVTTNNPVANPDFATITGAAANPGSVTIDVTAND
GPGNTGGTLGTPTIAVGPANGTASINGGGNLVYTPAAGFVGTDVVTYQVCETPGGLCATA
TVTIRVNAAGSPAVVSINDDYVSTPNGTPATGNLLDNDLGTGLTVSNPGTTVTSSGTLVT
TASGSFTFTPAAGVSGPATFTYTACDNASSCGTATLHVLVGQPLPDLTPTIELPSNNFTV
SGAESVKNFTVRIEEVAGGQTASGNIVFTITAPFGYSLAFDNSLTNTAVSGGGNVPVDNT
KWTVTSNNGLQLTLKINAGQFIPARGNSNIGFTITRTVTNSGTTSNITVNVADDASKTYD
SKPENNIYSRNINAL
NT seq
5268 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgttgtcgagactgctttacatggggccttatgatgttgatggcttttgctttt
caggcgagagcccagcaaagtgcagcaacatgcaatacgtttgcaccgcttacaagtcca
accttcggcaatctgtcagttacttccagtcagattcctgtttttgggggggatcagttt
gcaaataagggcagagttattgataatgatctgacgaatactgctgcgtatagtttctta
gtggcgggatcagcctaccttgaagtaaaagacaataatgcgaccggggcaaacctgtat
cctgcgggaacatttgccgggtttgtggtcagtgacaacacgatcctttcggcttttgga
acaacaaccattaccacatatgaaggtaatacgttgcaggagactagtactactggttcg
ctactagcaaccggtattgcgagtggccaagcacagctcggttttataacaacgaaaccc
tttgatcgaattcgcgtcacgttcagtgccttaggcgctggtactgtgagtgtttattac
gccgtcgtgcaacgatattgcgctagtcagactttggcctgtaatacaccgacccccgtg
aataatccggcatttgccgttgctgttagtccggctaatactggggttagtggggttaat
gtggggtcgatcagcaacgcgaacaatgccgttagtaacgacaacactgattttgcctca
gttaatataatagcgaatgtgggtacggcttcgtttgctatcaaggatcaggttacagat
tatccagccggaacatttgctggacttgatatttccagatctggcttactgagtgtcggt
gctctgtcagacctgacaatatcgacgtatctgaacggggtagctacagggcaaagcgta
tcgggatccagcctgcttgctgttggaagctcgatccttaacggtacagggcggcaaacg
gtcggctttgtcgctacccagccctttgatgaaatcaagttaacgttcagcggagttact
ataggggtaaccaatatttacggtgctgtttttcagcggttctgtgcaggaacccagttg
gcttgtaatgtacttacaccagttgcgaatcctgctcagcctgtttatgtcgatggacgg
aatacaggcattgacgcaacgctttgtgccgcttgtagtatcaataactcacaaaacgcc
attgacagcgacccatcgaactttgcttcaatcgagttgacggcgggtgtggcaacgagt
gcaagcttcgctgtggcgaacgccattgatacctatgcagtgaacagttttgccgggttt
gatattgaaacgaattcgctgctgaacgctaacgcgctgagtacggcaactatctcgttg
tacaataatggagcgctggtccagacgggtaccggaaatgcgttgattgttggggcgaca
actggcctgcaggacggtagaagccgacaaattgttggtatcgtagccaatgttgcttac
gacgaggttaaagtcacgtttgcccaagtggccagtgccaacctcggaagcgtacggatt
tacagcgccgtacttgaaaatacgtgtgctacttccatcgtttgtaacacggcctataat
ctaagcagcccagcatttccggccgttattgacggggctagaacgggtgtaagcggagcg
gttggtgtaacactcagtagcgctaatgtgctgaatgcgcagaatgttatttcggccagc
acaacggattttgcccggatcacaaacacagcctccgttgctgcggtaacctcaattgcg
gtccttgatccggtcaatacattccctgtaggtacttttgccggatttaccataagacga
gtcaatggtttagttgcggcagacctgtttgaccagctaactgtcactacatatctggat
ggcgtacaacaagaggtcagaagtggccgtggtgctctacttgatttgtcggtagccttg
tttggctctacctctaattttgtcaacgtaggctttgcaacaacaaaggcattcgacgaa
attcagctaagtgttgctccgctggttggtcttggtgtgttgggaggggggcttgacgta
tttggtgccttcatcgatacccgtacctcaaccggtggcagtctggtttgtgcgctgaat
accaaccccgatttcacggtgaccaacatcaacgtacccgtctcgggcagtgtgcgcacc
aacgacaacgtgcccgccggtaccacctacggtcccgctgcgacgctgatcagccagcca
gggggctcgacgcctaccctgacgctcaacaacgatggcagcttcaacttcaccagcgct
acggcgggtgtgtacgtctacagcatccccgtctgccccgccggtacgaccacgggctgc
cagacccagacgctgacggtgacggtgctcaaccccggagtaaccaccaacaatccggtg
gctaacccggactttgctaccatcaccggggcggcagccaatcctggctcggtgaccatc
gatgtgacggccaacgacggaccgggcaacacgggtggcacgctaggcacacccaccatc
gcggctgctcctgctaacgggtcggccagcatcaatggcagcggcaacctggtctacacg
cccacggcgggttttgtgggcaccgatgtggtgacttaccaggtctgtgagacgccaggc
ggtctgtgcgccacggcgacggtgacgatccgggtcaacgcagcgggcagcccggcggtg
gtctcgatcaacgacgactatgtctctacaccaaatggcacgccagccacgggcaacctg
ctggacaacgacttgggcacgggcctgacggtatcgaacccaggcacgaccgttacctcg
tcgggtacgctggtgacgacggccaatgggggctttagcttctcggctactcccggcacg
acgggtccggcgacgttcacctacacggcctgcgacaacgcgtccaactgcggcacggct
accttgcatgtgctggtgggccaaccggtaacaccggctccggtgctgaataccaaccct
gacttcacggtgactaacatcaacgtacccgtctcgggcagcgtgcgcaccaacgacaac
gtgcctgccggtaccacctacggtcccgctgcgacgctgatcagccagccagggggctcg
acgcctaccctgacgctcaacaacgatggcagcttcaacttcaccagcgctacggcgggc
gtgtacgtctacagcatccccgtctgccccgccggtacgaccacgggctgccagacccag
acgctgacggtgacggtgctcaacccaacggtgaccaccaacaatccagtggctaaccct
gactttgccaccatcacgggggcggcagccaatcctggctcggtgaccatcgatgtgacg
gccaacgatggaccgggcaacacgggcggcagcttgggcacacctaccatcgcagcagga
ccagccaacgggtcggccagcatcaatggcagcggcaacctggtctacaccccagcggca
ggctttgtgggtaccgatgtggtgacttaccaggtgtgtgagacgccgggtggtctgtgt
gcgacggcgacggtgacgattcgggtcaacgcagcgggcagcccggcggtggtctcgatc
aacgacgactatgtctctacaccaaatggcacgccagccacgggcaacctgctggacaac
gacttgggcacgggcctgacggtatcgaacccaggcacgaccgttacctcgtcgggtacg
ctggtgacgacggccaatgggggctttagcttctcggctactcccggcacgacgggtccg
gcgacgttcacctacacggcctgcgacaacgcgtccaactgcggcacggctaccttgcat
gtgctggtgggccaaccggtaacaccggctccggtgctgaataccaaccctgacttcacg
gtgactaacatcaacgtacccgtctcgggcagcgtgcgcaccaacgacaacgtgcctgcc
ggtaccacctacggtcccgctgcgacgctgattagccagccagggggctcgacgcctacc
ctgacgctcaacaacgatggcagcttcaacttcaccagcgctacggcgggtgtgtacgtc
tacagcatccccgtctgccccgccggtacgaccacgggctgccagacccagacgctgacg
gtgacggtgctcaacccaacggtgaccaccaacaatccagtggctaacccggactttgct
accatcaccggggcggcagccaatcctggctcggtgaccatcgatgtgacggccaacgac
ggaccgggcaacacgggcggcacgctaggcacacccaccatcgcagtagggccagccaac
ggcacggccagcatcaatggcggtggcaacctggtctacaccccagcggcaggctttgtg
ggtaccgatgtggtgacttaccaggtgtgtgagacgccgggtggtctgtgtgcgacggcg
acggtgacgattcgggtcaacgcagcgggcagcccagcggtggtctcgatcaacgacgac
tatgtctctacaccaaatggcacgccagccacgggcaacctgctggacaacgacttgggc
acgggcctgacggtatcgaacccaggcacgaccgttacctcgtcgggtacgctggtgacc
accgcttcgggtagtttcacgttcacccccgcagcgggagtaagtggtccggcgacgttc
acctacacggcttgcgataacgcatcaagctgcggcacggcaaccctgcacgtattggta
ggacaaccgctgccggatttgacgccgaccatcgaattaccgtcaaataacttcactgtc
tccggcgcggagtctgtgaaaaatttcacggtgcgaatagaggaagttgcgggaggacaa
acggctagtggtaacatagtctttacgattacggctccgtttggatactcgcttgctttt
gacaattcattgaccaatacggcggtctcaggtggaggtaacgttccggttgataataca
aagtggaccgttacgtcgaacaatggattacaactgacgctgaagataaacgctggacag
tttatccctgctagaggaaactcgaacattggattcaccatcacgcgcactgtaaccaat
tcgggaacaacgtctaatattacggtcaatgtggccgacgatgcgtcgaaaacttacgat
agtaagccggaaaataatatttactcgagaaatattaacgctttgtaa
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