Spirosoma oryzicola: LQ777_12695
Help
Entry
LQ777_12695 CDS
T08981
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
soq
Spirosoma oryzicola
Pathway
soq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LQ777_12695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soq03019
]
LQ777_12695
03016 Transfer RNA biogenesis [BR:
soq03016
]
LQ777_12695
Enzymes [BR:
soq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LQ777_12695
Messenger RNA biogenesis [BR:
soq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LQ777_12695
Transfer RNA biogenesis [BR:
soq03016
]
Prokaryotic type
tRNA degradation factors
LQ777_12695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_RRP5
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
UHG89104
LinkDB
All DBs
Position
complement(3003677..3005803)
Genome browser
AA seq
708 aa
AA seq
DB search
MFQITTQSVALPDGREITIETGKLARQADGAVVVRLGDTMLLATVVSSKEAKEGVDFLPL
SVDYQEKFASAGRIPGSFQRREGRLGDHEILISRLVDRALRPIFPDNYHADTQVIITLIS
ADPEVQPDALAALAASSALAVSDIPFNGPISEVRVAKIDGQYKINPKTADLDRATLDLIV
AATEKDICMVEGEMSECSEAEVVEALKAAHEAIKVQCQAQKELEAKVGKTEKREYNHETH
DEELRAAVRAYCYDKIYEVARRQNPSKKGRSEGFKEVQQEYLATFPEGSEVNVGLVKTYF
HDLVWEASRRLVLDERVRLDGRQLDQIRPISAEAGYLPGPHGSALFTRGETQSLTTVTLG
TKIDEQIVDQAMFQGYSKFLLHYNFPGFSTGEVKPNRGAGRREIGHGNLAHRSLKKVLPP
EAENPYTIRVVSDILESNGSSSMATVCAGTMALMDAGIKIKAPVAGIAMGLISDGEKYAV
LSDILGDEDHLGDMDFKVTGTENGIVACQMDLKVDGLSYEVLAQALEQARRGRLHILGEM
AKGIADVRSDLKAHAPRAIVIKIETNQIGAVIGPGGKVVQDIQKDSGAVVNIDEHDNAGW
VSIFATNKESMDKAVSRVKGIVAVPEVGEVYVGKVKTIQPFGAFVEFMPGKDGLLHISEI
KWERLESMEGVLQVGEEVSVKLIDIDKKTGKYRLSRKVLLPKPENKNA
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaaatcaccacgcaatccgttgcgctgcccgacgggcgggaaattaccatcgaa
accggcaaactggccagacaggccgacggagcggtggttgtgcggttgggcgacaccatg
ctgttagccacagtcgtatcgagtaaagaggctaaagaaggcgttgatttcctgccctta
tcggttgattatcaggaaaaattcgcgtctgctggtcgaattcctggtagcttccaacgg
cgtgaaggtcgcctgggcgatcacgaaattctgatcagtcgtttggtagaccgtgccctg
cggcctatttttcccgacaattatcacgctgatacacaagtaattataaccctgatttcg
gctgatccggaagttcagcccgatgccctggccgcgctagctgcctcgtcagcgctggcc
gtatcggatattccgttcaacggtcccatttccgaagtgcgggtggcgaagattgacggt
cagtacaaaatcaacccaaaaacggctgatcttgaccgggctacccttgatttgatcgta
gccgcgacggaaaaagatatttgcatggtggaaggcgagatgagcgaatgctcagaagcc
gaagtggtcgaggctctcaaggccgctcacgaagccatcaaagtacagtgccaggcgcag
aaagaactggaagcgaaagttggcaagaccgaaaagcgcgagtacaaccacgaaacgcac
gacgaagaactgcgggcggctgttcgggcgtattgctacgataagatatacgaagtagcc
cgtcggcagaacccaagcaaaaagggccgttcggaaggcttcaaagaagtgcagcaggaa
tacctggctacgttccccgaaggatcggaggttaacgtcggtctggttaaaacgtatttc
catgatctggtctgggaagcgtcccgccgactggtacttgacgagcgcgttcggttagac
ggtcgtcagctggatcaaatccgtccgatttcggcggaggctggctatctgccgggaccg
cacggatcagccttgtttacccggggcgaaacgcagtcattaacgacggttacgctggga
accaagattgatgagcagatcgtcgatcaggcgatgttccagggctacagtaaattcctg
ttacactataacttccctggtttttcgaccggtgaggtaaaaccaaaccggggcgctggc
cgccgggaaatcggacacggtaatctggcgcaccgttcgttgaagaaagtgttgccaccg
gaagccgagaacccgtacacaatccgggtcgtttctgatatcctggaatcaaacggttcg
tcgtcgatggcaacggtatgtgccggaacgatggcgctgatggatgcgggtatcaaaatc
aaagcgccagtagccggtatcgccatggggctgatctcggatggcgagaaatacgcggta
ttgtcggatatcctcggtgacgaagatcacctgggtgatatggacttcaaggtgacgggt
accgaaaacggtattgttgcctgccagatggacctgaaagttgacggtctgtcgtatgaa
gtgttggcacaggcgttggaacaagcgcgccggggccgtctgcacattcttggcgagatg
gcgaaaggaattgccgatgtccgttcggatctgaaagcccacgctccccgcgccattgtt
atcaagatcgagacgaaccaaatcggtgccgttattggacccggtggtaaagtcgttcag
gatatccaaaaagattcgggtgctgtcgttaacatcgatgaacacgataatgcgggttgg
gtaagcatcttcgcaaccaacaaggaaagcatggacaaagccgtttcccgcgtgaagggt
attgtggccgtgccggaggttggcgaagtgtacgttggtaaagtaaaaaccattcagccc
ttcggtgcgttcgttgaatttatgcccggaaaagatggacttttgcatatttccgagatt
aaatgggaacggctggagtcaatggaaggcgttctacaagtaggcgaagaagtttccgta
aagttgatcgacatcgataaaaagacaggaaagtatcgcttatctcgcaaagttcttctt
ccgaagccggagaacaaaaacgcgtaa
DBGET
integrated database retrieval system
