Spirosoma oryzicola: LQ777_16535
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Entry
LQ777_16535 CDS
T08981
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
soq
Spirosoma oryzicola
Pathway
soq03030
DNA replication
soq03410
Base excision repair
soq03420
Nucleotide excision repair
soq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
soq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LQ777_16535 (polA)
03410 Base excision repair
LQ777_16535 (polA)
03420 Nucleotide excision repair
LQ777_16535 (polA)
03440 Homologous recombination
LQ777_16535 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
soq03032
]
LQ777_16535 (polA)
03400 DNA repair and recombination proteins [BR:
soq03400
]
LQ777_16535 (polA)
Enzymes [BR:
soq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LQ777_16535 (polA)
DNA replication proteins [BR:
soq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LQ777_16535 (polA)
DNA repair and recombination proteins [BR:
soq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LQ777_16535 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LQ777_16535 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_2
HHH_5
HHH
DUF3913
RecR_HhH
Motif
Other DBs
NCBI-ProteinID:
UHG89849
LinkDB
All DBs
Position
complement(3910704..3913802)
Genome browser
AA seq
1032 aa
AA seq
DB search
MAKPQKKLFLLDALALIYRAHFAFNKSPRISSRGVNTSAIFGFMNAMIEVLTKEKPTHIG
VAFDSSKKTFRHEQFPLYKATRQSQPEDISVATPYIKKIVEAMQIPILILEGYEADDIIG
TIAKKAALADFEVYMMTPDKDYGQLVEEHVHIYKPAFMGKPAEKLGVSEVLERWQIERID
QVTDMLGLMGDSVDNIPGIPGVGEKTAQKLIADFGSVENLIANADQLKGKLKENVVNYGQ
QGLLSKQLATIHLDVPVAFDEDLLRHTEYDKPRLSALLDELEFRQMKTRLLGPNYDESPA
ADSPKKPASGQMDLFNSPGGDAPAFLPFPNMGRSGDPALNPSGAEDLPFDFGSVGNAPAA
SEPVEKPKTKAKRTSVKAPVASASAATPDVVTDSSTIEGAEKVTAEPDQPAYLDVYPDYE
IDENQPERRKTITSVKHDYRLVDTPELRASLVHYLSLQESICFDSETTAIDPVEADLVGL
SFSYRTGEAFYVPVPENREEAQAIVDQFKPVFENPAIGKIGQNLKYDLLMLKKYGVEVQG
KLFDTMIAHYLIEPEMRHNMDMMAMTYLNYQPVEIESLIGKKGKGQLSMRDVEVQKVVEY
AGEDADITLQLKETFAPRLEKDNLHKLFDQVEMPLVQVLTDLELEGITIDTNALAELSAT
LDTDMRQVQQEIFAIAGDSFNIGSPKQLGEILFDKLKLDKNAKKTKTGQYATGEEVLSKL
EEEHEIARKILDYRELIKLKNTYVDALPLLISKRTGRIHTSFNQAVASTGRLSSANPNLQ
NIPIRTPRGQEIRKAFVPRGPEFLIMSADYSQIELRIMAAFSGDQTMLDAFNNGVDIHTQ
TASKVFHVPISEVTGDMRRKAKTINFGIIYGISSFGLAQRLKIPRKEAAQIIEEYFGEFP
AVKAYMDQSIEKARGFGYAETILGRRRYLRDINSRNVTDRMFAERNAVNAPIQGSAADML
KIAMIRIHEFMQAERLKSKMILTVHDELVFDAHRDEIDLLRERVNDIMKNAIPMAVQMET
GIGTGENWLLAH
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaccacaaaaaaaactctttctgttagacgcgctggcgcttatttaccgcgcc
cattttgctttcaacaaatcaccccgtatctcgtcgcgcggggttaacacgtcggctatt
tttggtttcatgaacgccatgatcgaggtgctgaccaaagaaaaaccgacgcacatcggc
gttgcgttcgactcctcgaagaagacgttccgccatgagcagtttccgctgtacaaagcc
acccggcagtcgcaacccgaagacatcagcgtcgcaacgccttacatcaaaaagattgtt
gaagcgatgcagattcctatcctgattctggaagggtacgaggctgatgatattatcgga
accatcgccaaaaaagcggctctggctgatttcgaggtgtacatgatgacacccgacaag
gattacggtcagctggtggaagaacacgttcatatttacaaaccggctttcatgggcaaa
cccgctgagaagctaggcgtatctgaagtgctggagcgttggcagatcgaacgaatcgac
caggtgaccgatatgctgggtctgatgggcgattcggtggataatattcctggtattccg
ggagtaggtgaaaagacggcgcagaagctgattgctgattttggctccgtcgaaaacctg
attgctaatgctgatcagttaaagggtaagcttaaagaaaatgtcgtcaattatgggcag
caaggcttgctgtcgaagcagctggcgacgattcaccttgatgtgccggtcgcgtttgat
gaagacctgctgcggcataccgaatacgataagccccgcctgtcggctttgctggacgaa
ctggagtttcggcagatgaaaacccgtctgctgggtccgaattacgacgagagtccagcg
gctgactcaccgaaaaaaccggcctcgggacagatggatttgtttaattcgccgggtggt
gatgcgccagcgtttcttcctttcccgaacatgggacggtccggcgatccggcgctgaac
ccatccggtgcagaagacttgccgtttgattttggttcggtcggtaacgcgcctgcggct
agcgagccagtcgaaaagccgaagacgaaagccaagcgaaccagcgtaaaagcaccggta
gcttccgcgtcggcagcgacccccgatgtcgtgaccgattcgtcaacgattgaaggggcg
gagaaagtcaccgcagaacccgatcagcccgcttatctcgacgtgtaccccgactacgag
attgacgagaatcagcccgaacgtcggaaaacgattacgtcggtcaagcacgattaccgg
ctggtcgatacacccgagttgcgggcgagtctggttcactacctgagtttgcaggaaagt
atctgctttgactccgaaacaaccgccatcgatccggtcgaggccgatctggttggtctg
tcattctcgtaccgaacaggcgaagcgttttatgtacccgtaccggaaaatcgggaagaa
gcgcaggccattgttgatcagtttaagcccgtctttgagaatccggccattggtaagatt
ggtcagaacttgaagtacgacctgctgatgctcaaaaagtacggcgtagaggtgcagggt
aagctgtttgacaccatgattgcccattacctcattgagcccgaaatgcgtcataacatg
gacatgatggcaatgacttatctgaattaccagccggttgaaatcgaatcgctgattggt
aaaaaagggaaggggcagctgtcgatgcgcgatgtggaggtgcaaaaagtagttgagtac
gcgggggaggacgctgatattacgcttcaactgaaagaaacgtttgcgccccggctcgaa
aaagataatctacacaagctgttcgatcaggttgagatgccgctcgtgcaggtgctgacg
gatctggagctggaaggcattactatcgataccaatgcgctggccgaactatctgcaacg
cttgataccgacatgcgacaggtgcagcaggaaatctttgctattgcgggggattcgttc
aacatcggctcgccgaagcagttgggtgaaattctgttcgataagctgaaactcgataaa
aacgctaaaaagaccaaaacaggtcagtacgccacgggcgaagaggtgttgtcgaaactc
gaagaagagcacgaaattgcccgtaaaattctggactatcgtgagctgatcaagctcaaa
aatacgtacgtggatgcgctgccgttgctcatcagtaaacgtacgggtcggattcatact
tcattcaaccaggccgtcgcatcgaccgggcggttatcgtcggcgaatccgaacctgcaa
aacattccgattcggaccccacgcggtcaggagattaggaaagcttttgtgccgcgtgga
ccggaatttctgatcatgtcggccgattactcgcagatcgaactgcggattatggcggct
ttcagtggtgatcagaccatgcttgatgcgttcaacaacggcgtcgatatccatacccag
acggccagtaaagttttccacgtacccatcagcgaggtaacgggcgatatgcgccggaaa
gccaaaaccatcaacttcgggattatctacggtatttcgtcgttcggactggcgcagcga
ttgaagattccccgcaaggaagccgctcaaattattgaggaatacttcggtgagtttccg
gcggtaaaagcgtacatggaccagagcatcgagaaagcacggggctttggctatgccgaa
acaatcctgggtcgccgtcggtacctgcgtgacatcaactcgcggaacgtaacggaccgg
atgtttgccgaacgtaacgccgtcaacgccccaattcagggaagtgccgccgatatgctt
aagatcgccatgatccgtattcatgagtttatgcaggccgagcggctgaaatcgaagatg
attctgacagtgcatgatgaactggtgttcgatgctcaccgtgacgaaatcgatttgttg
cgggagcgggttaatgacattatgaaaaatgcgattccgatggctgtgcagatggaaacc
ggtattggtaccggcgaaaactggctgctggcacactaa
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integrated database retrieval system
